java.lang.ArrayIndexOutOfBoundsException: -2143289344

JIRA | Earl Hathaway | 3 years ago
  1. 0

    I built a large airline dataset by concatenating the individual year files. This sometimes crashes the parse with the below error; other times, the parse just appears to freeze. Sometimes you see the below exception; sometimes you don't. Setups: h2o h2o-1.7.0.493 / sha 4 node cluster, Xmx10g, one node each on 1.161-1.164. data -> import files -> parse on /home/earl/./oldairlines/airlines.orig.all.withheader.25.csv.gz it will also die if you gunzip that; kevin and I repeatedly split the csv file and it will also die on /home/earl/oldairlines/25.splits/12.splits/6.split/xaa diagnoses: always dies on 4 nodes (4x10g on the 0xb[1-4] machines) dies < 10% of the time on 3 nodes (4x10g on 0xb[1-3]) rarely dies on 2 nodes (4x10g on 0xb[1-2]) sporadically dies on 1 node (4x40g on 0xb1) exact version: 04:01:10.042 main      INFO WATER: Build git branch: master 04:01:10.042 main      INFO WATER: Build git hash: ba4f4e157944e1adaff48e59f770c4a6dd02e6de 04:01:10.042 main      INFO WATER: Build git describe: ba4f4e1 04:01:10.042 main      INFO WATER: Build project version: 1.7.0.493 04:01:10.042 main      INFO WATER: Built by: 'jenkins' 04:01:10.043 main      INFO WATER: Built on: 'Tue Aug 20 01:01:45 PDT 2013' exception: 06:24:28.365 FJ-10-1 INFO WATER: Cloud of size 2 formed [/192.168.1.161:54321, /192.168.1.162:54321] 06:24:31.365 FJ-10-1 INFO WATER: Cloud of size 3 formed [/192.168.1.161:54321, /192.168.1.162:54321, /192.168.1.163:54321] 06:24:33.491 FJ-10-1 INFO WATER: Cloud of size 4 formed [/192.168.1.161:54321, /192.168.1.162:54321, /192.168.1.163:54321, /192.168.1.164:54321] 06:25:09.510 #:54321-0 INFO WATER: Start remote task#13 class water.parser.DParseTask from /192.168.1.163:54321 java.lang.ArrayIndexOutOfBoundsException: -2143289344 06:25:25.704 FJ-9-5 INFO WATER: at water.parser.CsvParser.parallelParse(CsvParser.java:436) 06:25:25.705 FJ-9-5 INFO WATER: at water.parser.DParseTask.map(DParseTask.java:536) 06:25:25.705 FJ-9-5 INFO WATER: at water.MRTask.lcompute(MRTask.java:66) 06:25:25.705 FJ-9-5 INFO WATER: at water.DRemoteTask.compute2(DRemoteTask.java:76) 06:25:25.705 FJ-9-5 INFO WATER: at water.H2O$H2OCountedCompleter.compute(H2O.java:572) 06:25:25.705 FJ-9-5 INFO WATER: at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) 06:25:25.770 FJ-9-5 INFO WATER: Done remote task#13 class water.parser.DParseTask to /192.168.1.163:54321 java.lang.NullPointerException 06:25:25.893 FJ-9-7 INFO WATER: at water.parser.DParseTask.addNumCol(DParseTask.java:944) 06:25:25.895 FJ-9-7 INFO WATER: at water.parser.CsvParser.parallelParse(CsvParser.java:273) 06:25:25.895 FJ-9-7 INFO WATER: at water.parser.DParseTask.map(DParseTask.java:565) 06:25:25.896 FJ-9-7 INFO WATER: at water.MRTask.lcompute(MRTask.java:66) 06:25:25.896 FJ-9-7 INFO WATER: at water.DRemoteTask.compute2(DRemoteTask.java:76) 06:25:25.897 FJ-9-7 INFO WATER: at water.H2O$H2OCountedCompleter.compute(H2O.java:572) 06:25:25.897 FJ-9-7 INFO WATER: at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) 06:25:25.898 FJ-9-7 INFO WATER: at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) 06:25:25.898 FJ-9-7 INFO WATER: at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) 06:25:25.899 FJ-9-7 INFO WATER: at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) 06:25:25.899 FJ-9-7 INFO WATER: at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104)

    JIRA | 3 years ago | Earl Hathaway
    java.lang.ArrayIndexOutOfBoundsException: -2143289344
  2. 0

    I built a large airline dataset by concatenating the individual year files. This sometimes crashes the parse with the below error; other times, the parse just appears to freeze. Sometimes you see the below exception; sometimes you don't. Setups: h2o h2o-1.7.0.493 / sha 4 node cluster, Xmx10g, one node each on 1.161-1.164. data -> import files -> parse on /home/earl/./oldairlines/airlines.orig.all.withheader.25.csv.gz it will also die if you gunzip that; kevin and I repeatedly split the csv file and it will also die on /home/earl/oldairlines/25.splits/12.splits/6.split/xaa diagnoses: always dies on 4 nodes (4x10g on the 0xb[1-4] machines) dies < 10% of the time on 3 nodes (4x10g on 0xb[1-3]) rarely dies on 2 nodes (4x10g on 0xb[1-2]) sporadically dies on 1 node (4x40g on 0xb1) exact version: 04:01:10.042 main      INFO WATER: Build git branch: master 04:01:10.042 main      INFO WATER: Build git hash: ba4f4e157944e1adaff48e59f770c4a6dd02e6de 04:01:10.042 main      INFO WATER: Build git describe: ba4f4e1 04:01:10.042 main      INFO WATER: Build project version: 1.7.0.493 04:01:10.042 main      INFO WATER: Built by: 'jenkins' 04:01:10.043 main      INFO WATER: Built on: 'Tue Aug 20 01:01:45 PDT 2013' exception: 06:24:28.365 FJ-10-1 INFO WATER: Cloud of size 2 formed [/192.168.1.161:54321, /192.168.1.162:54321] 06:24:31.365 FJ-10-1 INFO WATER: Cloud of size 3 formed [/192.168.1.161:54321, /192.168.1.162:54321, /192.168.1.163:54321] 06:24:33.491 FJ-10-1 INFO WATER: Cloud of size 4 formed [/192.168.1.161:54321, /192.168.1.162:54321, /192.168.1.163:54321, /192.168.1.164:54321] 06:25:09.510 #:54321-0 INFO WATER: Start remote task#13 class water.parser.DParseTask from /192.168.1.163:54321 java.lang.ArrayIndexOutOfBoundsException: -2143289344 06:25:25.704 FJ-9-5 INFO WATER: at water.parser.CsvParser.parallelParse(CsvParser.java:436) 06:25:25.705 FJ-9-5 INFO WATER: at water.parser.DParseTask.map(DParseTask.java:536) 06:25:25.705 FJ-9-5 INFO WATER: at water.MRTask.lcompute(MRTask.java:66) 06:25:25.705 FJ-9-5 INFO WATER: at water.DRemoteTask.compute2(DRemoteTask.java:76) 06:25:25.705 FJ-9-5 INFO WATER: at water.H2O$H2OCountedCompleter.compute(H2O.java:572) 06:25:25.705 FJ-9-5 INFO WATER: at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) 06:25:25.706 FJ-9-5 INFO WATER: at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) 06:25:25.770 FJ-9-5 INFO WATER: Done remote task#13 class water.parser.DParseTask to /192.168.1.163:54321 java.lang.NullPointerException 06:25:25.893 FJ-9-7 INFO WATER: at water.parser.DParseTask.addNumCol(DParseTask.java:944) 06:25:25.895 FJ-9-7 INFO WATER: at water.parser.CsvParser.parallelParse(CsvParser.java:273) 06:25:25.895 FJ-9-7 INFO WATER: at water.parser.DParseTask.map(DParseTask.java:565) 06:25:25.896 FJ-9-7 INFO WATER: at water.MRTask.lcompute(MRTask.java:66) 06:25:25.896 FJ-9-7 INFO WATER: at water.DRemoteTask.compute2(DRemoteTask.java:76) 06:25:25.897 FJ-9-7 INFO WATER: at water.H2O$H2OCountedCompleter.compute(H2O.java:572) 06:25:25.897 FJ-9-7 INFO WATER: at jsr166y.CountedCompleter.exec(CountedCompleter.java:429) 06:25:25.898 FJ-9-7 INFO WATER: at jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263) 06:25:25.898 FJ-9-7 INFO WATER: at jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974) 06:25:25.899 FJ-9-7 INFO WATER: at jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477) 06:25:25.899 FJ-9-7 INFO WATER: at jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104)

    JIRA | 3 years ago | Earl Hathaway
    java.lang.ArrayIndexOutOfBoundsException: -2143289344 06:25:25.704 FJ-9-5 INFO WATER: at water.parser.CsvParser.parallelParse(CsvParser.java:436)
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    java.lang.ArrayIndexOutOfBoundsException: 3 >= 3
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    java.lang.ArrayIndexOutOfBoundsException: 101

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    Root Cause Analysis

    1. java.lang.ArrayIndexOutOfBoundsException

      -2143289344

      at water.parser.CsvParser.parallelParse()
    2. water.parser
      DParseTask.map
      1. water.parser.CsvParser.parallelParse(CsvParser.java:436)
      2. water.parser.DParseTask.map(DParseTask.java:536)
      2 frames
    3. water
      H2O$H2OCountedCompleter.compute
      1. water.MRTask.lcompute(MRTask.java:66)
      2. water.DRemoteTask.compute2(DRemoteTask.java:76)
      3. water.H2O$H2OCountedCompleter.compute(H2O.java:572)
      3 frames
    4. jsr166y
      ForkJoinWorkerThread.run
      1. jsr166y.CountedCompleter.exec(CountedCompleter.java:429)
      2. jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:263)
      3. jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:974)
      4. jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1477)
      5. jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104)
      5 frames