java.lang.NumberFormatException: For input string: "chr11"

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Root Cause Analysis

  1. java.lang.NumberFormatException

    For input string: "chr11"

    at java.lang.NumberFormatException.forInputString()
  2. Java RT
    Integer.parseInt
    1. java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
    2. java.lang.Integer.parseInt(Integer.java:492)
    3. java.lang.Integer.parseInt(Integer.java:527)
    3 frames
  3. juicebox.tools.utils
    Preprocessor.preprocess
    1. juicebox.tools.utils.original.AsciiPairIterator.advance(AsciiPairIterator.java:145)
    2. juicebox.tools.utils.original.AsciiPairIterator.next(AsciiPairIterator.java:187)
    3. juicebox.tools.utils.original.Preprocessor.computeWholeGenomeMatrix(Preprocessor.java:433)
    4. juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:311)
    5. juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:223)
    5 frames
  4. juicebox.tools.clt
    PreProcessing.run
    1. juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:98)
    1 frame
  5. juicebox.tools
    HiCTools.main
    1. juicebox.tools.HiCTools.main(HiCTools.java:77)
    1 frame