java.lang.NoSuchMethodError

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  • GitHub comment 5#252740059
    via GitHub by Georgehe4
    ,
    • java.lang.NoSuchMethodError: org.apache.spark.SparkContext.emptyRDD(Lscala/reflect/ClassTag;)Lorg/apache/spark/rdd/EmptyRDD; at org.bdgenomics.mango.models.LazyMaterialization.put(LazyMaterialization.scala:136) at org.bdgenomics.mango.models.LazyMaterialization.getJson(LazyMaterialization.scala:90) at org.bdgenomics.mango.cli.VizServlet$$anonfun$11.apply(VizReads.scala:314) at org.scalatra.ScalatraBase$class.org$scalatra$ScalatraBase$$liftAction(ScalatraBase.scala:285) at org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:279) at org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:279) at org.scalatra.ScalatraBase$class.withRouteMultiParams(ScalatraBase.scala:356) at org.bdgenomics.mango.cli.VizServlet.withRouteMultiParams(VizReads.scala:206) at org.scalatra.ScalatraBase$class.invoke(ScalatraBase.scala:278) at org.bdgenomics.mango.cli.VizServlet.invoke(VizReads.scala:206) at org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:253) at org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:251) at scala.Option.flatMap(Option.scala:171) at org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:251) at org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:250) at scala.collection.immutable.Stream.flatMap(Stream.scala:493) at org.scalatra.ScalatraBase$class.runRoutes(ScalatraBase.scala:250) at org.bdgenomics.mango.cli.VizServlet.runRoutes(VizReads.scala:206) at org.scalatra.ScalatraBase$class.runActions$1(ScalatraBase.scala:175) at org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply$mcV$sp(ScalatraBase.scala:187) at org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:187) at org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:187) at org.scalatra.ScalatraBase$class.org$scalatra$ScalatraBase$$cradleHalt(ScalatraBase.scala:205) at org.scalatra.ScalatraBase$class.executeRoutes(ScalatraBase.scala:187) at org.bdgenomics.mango.cli.VizServlet.executeRoutes(VizReads.scala:206) at org.scalatra.ScalatraBase$$anonfun$handle$1.apply$mcV$sp(ScalatraBase.scala:126) at org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:126) at org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:126) at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58) at org.scalatra.DynamicScope$class.withResponse(DynamicScope.scala:78) at org.bdgenomics.mango.cli.VizServlet.withResponse(VizReads.scala:206) at org.scalatra.DynamicScope$$anonfun$withRequestResponse$1.apply(DynamicScope.scala:58) at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58) at org.scalatra.DynamicScope$class.withRequest(DynamicScope.scala:69) at org.bdgenomics.mango.cli.VizServlet.withRequest(VizReads.scala:206) at org.scalatra.DynamicScope$class.withRequestResponse(DynamicScope.scala:57) at org.bdgenomics.mango.cli.VizServlet.withRequestResponse(VizReads.scala:206) at org.scalatra.ScalatraBase$class.handle(ScalatraBase.scala:125) at org.bdgenomics.mango.cli.VizServlet.org$scalatra$servlet$ServletBase$$super$handle(VizReads.scala:206) at org.scalatra.servlet.ServletBase$class.handle(ServletBase.scala:53) at org.bdgenomics.mango.cli.VizServlet.handle(VizReads.scala:206) at org.scalatra.ScalatraServlet$class.service(ScalatraServlet.scala:60) at org.bdgenomics.mango.cli.VizServlet.service(VizReads.scala:206) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:812) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:587) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:499) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) at java.lang.Thread.run(Thread.java:745)
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