java.lang.reflect.InvocationTargetException: This exception has no message.

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java.lang.IllegalStateException: Inappropriate call if not paired read
at htsjdk.samtools.SAMRecord.requireReadPaired(SAMRecord.java:648)
at org.broadinstitute.pilon.BamFile$MateMap.addRead(BamFile.scala:224)
at org.broadinstitute.pilon.BamFile$MateMap$$anonfun$addReads$1.apply(BamFile.scala:220)
at org.broadinstitute.pilon.BamFile$MateMap$$anonfun$addReads$1.apply(BamFile.scala:220)
at org.broadinstitute.pilon.BamFile$MateMap.addReads(BamFile.scala:220)
at org.broadinstitute.pilon.BamFile$MateMap.(BamFile.scala:218)
at org.broadinstitute.pilon.BamFile.recruitFlankReads(BamFile.scala:339)
at org.broadinstitute.pilon.GapFiller$$anonfun$recruitReadsOfType$1.apply(GapFiller.scala:367)
at org.broadinstitute.pilon.GapFiller$$anonfun$recruitReadsOfType$1.apply(GapFiller.scala:366)
at org.broadinstitute.pilon.GapFiller.recruitReadsOfType(GapFiller.scala:366)
at org.broadinstitute.pilon.GapFiller.recruitFrags(GapFiller.scala:375)
at org.broadinstitute.pilon.GapFiller.recruitLocalReads(GapFiller.scala:389)
at org.broadinstitute.pilon.GapFiller.recruitReads(GapFiller.scala:391)
at org.broadinstitute.pilon.GapFiller.assembleAcrossBreak(GapFiller.scala:51)
at org.broadinstitute.pilon.GapFiller.fixBreak(GapFiller.scala:45)
at org.broadinstitute.pilon.GenomeRegion$$anonfun$identifyAndFixIssues$4.apply(GenomeRegion.scala:381)
at org.broadinstitute.pilon.GenomeRegion$$anonfun$identifyAndFixIssues$4.apply(GenomeRegion.scala:379)
at org.broadinstitute.pilon.GenomeRegion.identifyAndFixIssues(GenomeRegion.scala:379)
at org.broadinstitute.pilon.GenomeFile$$anonfun$processRegions$4.apply(GenomeFile.scala:120)
at org.broadinstitute.pilon.GenomeFile$$anonfun$processRegions$4.apply(GenomeFile.scala:109)
at scala.collection.Iterator$class.foreach(Iterator.scala:893)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
at scala.collection.parallel.ParIterableLike$Foreach.leaf(ParIterableLike.scala:972)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply$mcV$sp(Tasks.scala:49)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$$anonfun$tryLeaf$1.apply(Tasks.scala:48)
at scala.collection.parallel.Task$class.tryLeaf(Tasks.scala:51)
at scala.collection.parallel.ParIterableLike$Foreach.tryLeaf(ParIterableLike.scala:969)
at scala.collection.parallel.AdaptiveWorkStealingTasks$WrappedTask$class.compute(Tasks.scala:152)
at scala.collection.parallel.AdaptiveWorkStealingForkJoinTasks$WrappedTask.compute(Tasks.scala:443)
at scala.concurrent.forkjoin.RecursiveAction.exec(RecursiveAction.java:160)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

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