org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 5, bio-x-3): java.io.IOException: The file being written is in an invalid state. Probably caused by an error thrown previously. Current state: COLUMN ...........

GitHub | BioDCH | 2 months ago
  1. 0

    GitHub comment 825#252825829

    GitHub | 2 months ago | BioDCH
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 5, bio-x-3): java.io.IOException: The file being written is in an invalid state. Probably caused by an error thrown previously. Current state: COLUMN ...........
  2. 0

    lookup value in a map inside a udf

    Stack Overflow | 4 weeks ago | Mike
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 257, hdpintdn13.visibleworld.com): java.lang.NullPointerException
  3. 0

    GitHub comment 6#227118695

    GitHub | 5 months ago | xubo245
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 5, Mcnode1): java.lang.UnsatisfiedLinkError: no bwa in java.library.path
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    ADAM how to improve performance ?

    Google Groups | 2 years ago | Unknown author
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 1 times, most recent failure: Lost task 0.0 in stage 2.0 (TID 4, localhost): java.util.NoSuchElementException: None.get
  6. 0

    GitHub comment 6#227113821

    GitHub | 5 months ago | xubo245
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 5, Mcnode4): java.lang.NoClassDefFoundError: Could not initialize class BwaJni

    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. org.apache.spark.SparkException

      Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 5, bio-x-3): java.io.IOException: The file being written is in an invalid state. Probably caused by an error thrown previously. Current state: COLUMN ...........

      at org.apache.spark.deploy.SparkSubmit.main()
    2. Spark
      SparkSubmit.main
      1. org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
      1 frame