java.lang.IllegalArgumentException: Multi-allelic site with non-ref symbolic allele[VC Unknown @ chr22:18027817-18027821 Q1364.73 of type=MIXED alleles=[CTTTT*, <NON_REF>, C, CT, CTT, CTTT] attr={DP=78, MLEAC=[0, 0, 1, 1, 0], MLEAF=[0.00, 0.00, 0.500, 0.500, 0.00], MQ=70.00, MQ0=0} GT=GT:AD:DP:GQ:PL:SB 3/4:0,4,6,28,17,0:55:99:1402,1244,2007,972,1382,1297,371,355,301,301,792,617,486,0,653,1038,1016,883,315,597,935:0,0,14,3

GitHub | jpdna | 5 months ago
tip
Do you know that we can give you better hits? Get more relevant results from Samebug’s stack trace search.
  1. 0

    gVCF - can't load multi-allelic sites

    GitHub | 5 months ago | jpdna
    java.lang.IllegalArgumentException: Multi-allelic site with non-ref symbolic allele[VC Unknown @ chr22:18027817-18027821 Q1364.73 of type=MIXED alleles=[CTTTT*, <NON_REF>, C, CT, CTT, CTTT] attr={DP=78, MLEAC=[0, 0, 1, 1, 0], MLEAF=[0.00, 0.00, 0.500, 0.500, 0.00], MQ=70.00, MQ0=0} GT=GT:AD:DP:GQ:PL:SB 3/4:0,4,6,28,17,0:55:99:1402,1244,2007,972,1382,1297,371,355,301,301,792,617,486,0,653,1038,1016,883,315,597,935:0,0,14,3
  2. 0

    Universal Image Loader : IllegalArgumentException when using FileNameGenerator with extension

    Stack Overflow | 2 years ago
    java.lang.IllegalArgumentException: keys must match regex [a-z0-9_-] {1,64}: "1828294.jpg" at com.nostra13.universalimageloader.cache.disc.impl.ext.DiskLruCache.valida teKey(DiskLruCache.java:697) at com.nostra13.universalimageloader.cache.disc.impl.ext.DiskLruCache.get(Di skLruCache.java:414) at com.nostra13.universalimageloader.cache.disc.impl.ext.LruDiscCache.get(Lr uDiscCache.java:133) at com.nostra13.universalimageloader.core.ImageLoaderEngine$1.run(ImageLoade rEngine.java:72) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java :1112) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.jav a:587)
  3. 0

    [elasticsearch] elasticsearch couchdb-river startup issues - Grokbase

    grokbase.com | 8 months ago
    java.lang.IllegalArgumentException: URI can't be null. at sun.net.spi.DefaultProxySelector.select(DefaultProxySelector.java:141) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:925) at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:849) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1299) at org.elasticsearch.river.couchdb.CouchdbRiver$Slurper.run(CouchdbRiver.java:468)
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    java.lang.IllegalArgumentException: argument type mismatch... WHEN DEPLOYING SIMPLE Service Assembly with servicemix-bean

    apache.org | 1 year ago
    java.lang.IllegalArgumentException: argument type mismatch</loc-message> <stack-trace></stack-trace> </msg-loc-info> </exception-info> </task-result-details> </component-task-result-details> </component-task-result> at org.apache.servicemix.common.ManagementSupport.failure(ManagementSupport.java:46)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.AbstractDeployer.failure(AbstractDeployer.java:43)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.xbean.AbstractXBeanDeployer.deploy(AbstractXBeanDeployer.java:118)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.BaseServiceUnitManager.doDeploy(BaseServiceUnitManager.java:88)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.common.BaseServiceUnitManager.deploy(BaseServiceUnitManager.java:69)[93:servicemix-common:2011.01.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.artifacts.ServiceUnitImpl.deploy(ServiceUnitImpl.java:104)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.ServiceAssemblyInstaller.deploySUs(ServiceAssemblyInstaller.java:207)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.ServiceAssemblyInstaller.install(ServiceAssemblyInstaller.java:85)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.Deployer.onBundleStarted(Deployer.java:334)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.apache.servicemix.jbi.deployer.impl.Deployer.bundleChanged(Deployer.java:264)[96:org.apache.servicemix.jbi.deployer:1.4.0.fuse-03-01] at org.eclipse.osgi.framework.internal.core.BundleContextImpl.dispatchEvent(BundleContextImpl.java:919)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.eventmgr.EventManager.dispatchEvent(EventManager.java:227)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.eventmgr.ListenerQueue.dispatchEventSynchronous(ListenerQueue.java:149)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.Framework.publishBundleEventPrivileged(Framework.java:1349)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.Framework.publishBundleEvent(Framework.java:1300)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.BundleHost.startWorker(BundleHost.java:380)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:284)[osgi-3.6.0.v20100517.jar:] at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:276)[osgi-3.6.0.v20100517.jar:] at org.apache.karaf.shell.osgi.RestartBundle.doExecute(RestartBundle.java:32)[27:org.apache.karaf.shell.osgi:2.1.6.fuse-01-01] at org.apache.karaf.shell.osgi.BundlesCommand.doExecute(BundlesCommand.java:49)[27:org.apache.karaf.shell.osgi:2.1.6.fuse-01-01] at org.apache.karaf.shell.console.OsgiCommandSupport.execute(OsgiCommandSupport.java:38)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.commands.basic.AbstractCommand.execute(AbstractCommand.java:35)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.CommandProxy.execute(CommandProxy.java:50)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.execute(Closure.java:229)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.executeStatement(Closure.java:162)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Pipe.run(Pipe.java:101)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.Closure.execute(Closure.java:79)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.felix.gogo.runtime.shell.CommandSessionImpl.execute(CommandSessionImpl.java:71)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01] at org.apache.karaf.shell.console.jline.Console.run(Console.java:170)[14:org.apache.karaf.shell.console:2.1.6.fuse-01-01]
  6. 0

    JIRA - User - Error importing data: java.lang.IllegalArgumentException: Type numeric not

    nabble.com | 1 year ago
    java.lang.IllegalArgumentException: Type numeric not found I'm trying to upgrade from Jira 3.12.1-#229 to 3.13.2-#335. My "logs/catalina.out" looks like this:

    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. java.lang.IllegalArgumentException

      Multi-allelic site with non-ref symbolic allele[VC Unknown @ chr22:18027817-18027821 Q1364.73 of type=MIXED alleles=[CTTTT*, <NON_REF>, C, CT, CTT, CTTT] attr={DP=78, MLEAC=[0, 0, 1, 1, 0], MLEAF=[0.00, 0.00, 0.500, 0.500, 0.00], MQ=70.00, MQ0=0} GT=GT:AD:DP:GQ:PL:SB 3/4:0,4,6,28,17,0:55:99:1402,1244,2007,972,1382,1297,371,355,301,301,792,617,486,0,653,1038,1016,883,315,597,935:0,0,14,3

      at org.bdgenomics.adam.converters.VariantContextConverter.convert()
    2. org.bdgenomics.adam
      ADAMContext$$anonfun$loadVcf$1.apply
      1. org.bdgenomics.adam.converters.VariantContextConverter.convert(VariantContextConverter.scala:214)
      2. org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadVcf$1.apply(ADAMContext.scala:823)
      3. org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadVcf$1.apply(ADAMContext.scala:823)
      3 frames
    3. Scala
      Iterator$$anon$13.hasNext
      1. scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
      1 frame
    4. Spark
      Executor$TaskRunner.run
      1. org.apache.spark.util.Utils$.getIteratorSize(Utils.scala:1595)
      2. org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1157)
      3. org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1157)
      4. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
      5. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
      6. org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
      7. org.apache.spark.scheduler.Task.run(Task.scala:89)
      8. org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
      8 frames
    5. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames