java.util.concurrent.ExecutionException: htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 21: The VCF specification requires a valid filter status: filter was

Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via GitHub by heuermh
, 1 year ago
htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 21: The VCF specification requires a valid filter status: filter was
via GitHub by glaubermmferreira
, 10 months ago
com.google.gson.JsonSyntaxException: java.lang.NumberFormatException: Expected an int but was -1001035840229 at line 2 column 145 path $.result[0].message.chat.id
via GitHub by ExpressionAnalysis
, 2 months ago
htsjdk.samtools.SAMException: Malformed query; start point 27662 lies after end point 0
via mendix.com by Unknown author, 1 year ago
com.mendix.modules.microflowengine.MicroflowException: com.mendix.core.CoreRuntimeException: com.mendix.systemwideinterfaces.MendixRuntimeException: javax.crypto.BadPaddingException: Given final block not properly padded at Encryption.Decrypt
via soso.io by Unknown author, 2 years ago
com.amazonaws.AmazonServiceException: Status Code: 400, AWS Service: AmazonEC2, AWS Request ID: 38956486-2686-4466-b9e0-45ef12395676, AWS Error Code: InvalidParameterValue, AWS Error Message: Invalid availability zone: [us-west-2]
via dolinked.com by Unknown author, 1 year ago
com.amazonaws.AmazonServiceException: Status Code: 400, AWS Service: AmazonEC2, AWS Request ID: 38956486-2686-4466-b9e0-45ef12395676, AWS Error Code: InvalidParameterValue, AWS Error Message: Invalid availability zone: [us-west-2]
java.util.concurrent.ExecutionException: htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 21: The VCF specification requires a valid filter status: filter was
at htsjdk.variant.vcf.AbstractVCFCodec.generateException(AbstractVCFCodec.java:783)
at htsjdk.variant.vcf.VCFCodec.parseFilters(VCFCodec.java:138)
at htsjdk.variant.vcf.AbstractVCFCodec.parseVCFLine(AbstractVCFCodec.java:319)
at htsjdk.variant.vcf.AbstractVCFCodec.decodeLine(AbstractVCFCodec.java:279)
at htsjdk.variant.vcf.AbstractVCFCodec.decode(AbstractVCFCodec.java:257)
at org.bdgenomics.adam.rdd.variation.VCFOutFormatter.convertIterator$1(VCFOutFormatter.scala:60)
at org.bdgenomics.adam.rdd.variation.VCFOutFormatter.read(VCFOutFormatter.scala:66)
at org.bdgenomics.adam.rdd.OutFormatterRunner.call(OutFormatter.scala:27)
at org.bdgenomics.adam.rdd.OutFormatterRunner.call(OutFormatter.scala:23)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Users with the same issue

You are the first who have seen this exception. Write a tip to help other users and build your expert profile.

Know the solutions? Share your knowledge to help other developers to debug faster.