com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException

You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3 ; bad SQL grammar []; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3] with root cause com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3

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  • ", "mutation"."MUTATION_STATUS" as "mutati' at line 3] with root cause com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3
  • via visitlakecounty.org by Unknown author, 1 year ago
    You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '' at line 3
  • You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '' at line 3
  • Stack trace

    • com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3 ; bad SQL grammar []; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3] with root cause com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near '."CENTER" as "sequencingCenter", "mutation"."MUTATION_STATUS" as "mutati' at line 3 at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at com.mysql.jdbc.Util.handleNewInstance(Util.java:411) at com.mysql.jdbc.Util.getInstance(Util.java:386) at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1052) at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3597) at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3529) at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1990) at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2151) at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2625) at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:2119) at com.mysql.jdbc.PreparedStatement.execute(PreparedStatement.java:1362) at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:172) at org.apache.tomcat.dbcp.dbcp.DelegatingPreparedStatement.execute(DelegatingPreparedStatement.java:172) at org.apache.ibatis.executor.statement.PreparedStatementHandler.query(PreparedStatementHandler.java:59) at org.apache.ibatis.executor.statement.RoutingStatementHandler.query(RoutingStatementHandler.java:73) at org.apache.ibatis.executor.SimpleExecutor.doQuery(SimpleExecutor.java:60) at org.apache.ibatis.executor.BaseExecutor.queryFromDatabase(BaseExecutor.java:267) at org.apache.ibatis.executor.BaseExecutor.query(BaseExecutor.java:137) at org.apache.ibatis.executor.CachingExecutor.query(CachingExecutor.java:90) at org.apache.ibatis.executor.CachingExecutor.query(CachingExecutor.java:77) at org.apache.ibatis.session.defaults.DefaultSqlSession.selectList(DefaultSqlSession.java:108) at org.apache.ibatis.session.defaults.DefaultSqlSession.selectList(DefaultSqlSession.java:102) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.mybatis.spring.SqlSessionTemplate$SqlSessionInterceptor.invoke(SqlSessionTemplate.java:358) at com.sun.proxy.$Proxy206.selectList(Unknown Source) at org.mybatis.spring.SqlSessionTemplate.selectList(SqlSessionTemplate.java:198) at org.apache.ibatis.binding.MapperMethod.executeForMany(MapperMethod.java:119) at org.apache.ibatis.binding.MapperMethod.execute(MapperMethod.java:63) at org.apache.ibatis.binding.MapperProxy.invoke(MapperProxy.java:52) at com.sun.proxy.$Proxy213.getMutations(Unknown Source) at org.cbioportal.persistence.mybatis.MutationMyBatisRepository.getMutations(MutationMyBatisRepository.java:19) at org.cbioportal.service.impl.MutationServiceImpl.getMutations(MutationServiceImpl.java:20) at org.mskcc.cbio.portal.service.ApiService.getGeneticProfileData(ApiService.java:363) at org.mskcc.cbio.portal.service.ApiService$$FastClassBySpringCGLIB$$e4cf2f40.invoke(<generated>) at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204) at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:708) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:98) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:262) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:95) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:644) at org.mskcc.cbio.portal.service.ApiService$$EnhancerBySpringCGLIB$$426659a7.getGeneticProfileData(<generated>) at org.mskcc.cbio.portal.web.api.ApiController.getGeneticProfileData(ApiController.java:314) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:215) at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:132) at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104) at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:749) at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:689) at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:83) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:938) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:870) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:961) at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:863) at javax.servlet.http.HttpServlet.service(HttpServlet.java:647) at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:837) at javax.servlet.http.HttpServlet.service(HttpServlet.java:728) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.mskcc.cbio.portal.util.XssFilter.doFilter(XssFilter.java:65) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:186) at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:160) at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:344) at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:261) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.filters.CorsFilter.handleSimpleCORS(CorsFilter.java:302) at org.apache.catalina.filters.CorsFilter.doFilter(CorsFilter.java:170) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) at org.apache.coyote.ajp.AjpProcessor.process(AjpProcessor.java:200) at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589) at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:745)

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