org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 3.0 failed 1 times, most recent failure: Lost task 3.0 in stage 3.0 (TID 6, localhost): java.lang.NullPointerException

GitHub | fahadsiddiqui | 2 months ago
  1. 0

    NullPointerException generated

    GitHub | 2 months ago | fahadsiddiqui
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 3.0 failed 1 times, most recent failure: Lost task 3.0 in stage 3.0 (TID 6, localhost): java.lang.NullPointerException
  2. 0

    Sample example which does not works

    GitHub | 11 months ago | fabiofumarola
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in stage 3.0 failed 1 times, most recent failure: Lost task 5.0 in stage 3.0 (TID 29, localhost): java.lang.NullPointerException
  3. 0

    Avocado fails with NPE to convert bam.adam to bam.vcf

    GitHub | 2 years ago | allenday
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 3 in stage 3.0 failed 1 times, most recent failure: Lost task 3.0 in stage 3.0 (TID 6, localhost): java.lang.NullPointerException
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  5. 0

    scala - Spark-Java本地模式运行,导出文件跳空指针 - SegmentFault

    segmentfault.com | 3 months ago
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 1 times, most recent failure: Lost task 0.0 in stage 3.0 (TID 5, localhost): java.lang.NullPointerException
  6. 0

    Spark-Java本地模式运行,导出文件跳空指针 - SegmentFault

    segmentfault.com | 1 year ago
    org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 3.0 failed 1 times, most recent failure: Lost task 0.0 in stage 3.0 (TID 5, localhost): java.lang.NullPointerException

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    Root Cause Analysis

    1. org.apache.spark.SparkException

      Job aborted due to stage failure: Task 3 in stage 3.0 failed 1 times, most recent failure: Lost task 3.0 in stage 3.0 (TID 6, localhost): java.lang.NullPointerException

      at com.tribbloids.spookystuff.utils.Utils$.uriSlash()
    2. com.tribbloids.spookystuff
      Utils$$anonfun$uriConcat$1.apply
      1. com.tribbloids.spookystuff.utils.Utils$.uriSlash(Utils.scala:55)
      2. com.tribbloids.spookystuff.utils.Utils$$anonfun$uriConcat$1.apply(Utils.scala:49)
      3. com.tribbloids.spookystuff.utils.Utils$$anonfun$uriConcat$1.apply(Utils.scala:48)
      3 frames
    3. Scala
      WrappedArray.foreach
      1. scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
      2. scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:34)
      2 frames
    4. com.tribbloids.spookystuff
      TraceView$$anonfun$4.apply
      1. com.tribbloids.spookystuff.utils.Utils$.uriConcat(Utils.scala:48)
      2. com.tribbloids.spookystuff.pages.PageUtils$.autoRestore(PageUtils.scala:183)
      3. com.tribbloids.spookystuff.actions.TraceView$$anonfun$4.apply(TraceView.scala:95)
      4. com.tribbloids.spookystuff.actions.TraceView$$anonfun$4.apply(TraceView.scala:95)
      4 frames
    5. Scala
      AbstractTraversable.map
      1. scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
      2. scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
      3. scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
      4. scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
      5. scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
      6. scala.collection.AbstractTraversable.map(Traversable.scala:105)
      6 frames
    6. com.tribbloids.spookystuff
      TraceView$$anonfun$2.apply
      1. com.tribbloids.spookystuff.actions.TraceView.fetchOnce(TraceView.scala:95)
      2. com.tribbloids.spookystuff.actions.TraceView$$anonfun$2.apply(TraceView.scala:83)
      3. com.tribbloids.spookystuff.actions.TraceView$$anonfun$2.apply(TraceView.scala:83)
      3 frames
    7. Scala
      Try$.apply
      1. scala.util.Try$.apply(Try.scala:161)
      1 frame
    8. com.tribbloids.spookystuff
      PageRowRDD$$anonfun$26.apply
      1. com.tribbloids.spookystuff.utils.Utils$.retry(Utils.scala:22)
      2. com.tribbloids.spookystuff.actions.TraceView.fetch(TraceView.scala:82)
      3. com.tribbloids.spookystuff.sparkbinding.PageRowRDD$$anonfun$26.apply(PageRowRDD.scala:491)
      4. com.tribbloids.spookystuff.sparkbinding.PageRowRDD$$anonfun$26.apply(PageRowRDD.scala:490)
      4 frames
    9. Scala
      AbstractIterator.toArray
      1. scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
      2. scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
      3. scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
      4. scala.collection.Iterator$class.foreach(Iterator.scala:727)
      5. scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
      6. scala.collection.generic.Growable$class.$plus$plus$eq(Growable.scala:48)
      7. scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:103)
      8. scala.collection.mutable.ArrayBuffer.$plus$plus$eq(ArrayBuffer.scala:47)
      9. scala.collection.TraversableOnce$class.to(TraversableOnce.scala:273)
      10. scala.collection.AbstractIterator.to(Iterator.scala:1157)
      11. scala.collection.TraversableOnce$class.toBuffer(TraversableOnce.scala:265)
      12. scala.collection.AbstractIterator.toBuffer(Iterator.scala:1157)
      13. scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252)
      14. scala.collection.AbstractIterator.toArray(Iterator.scala:1157)
      14 frames
    10. Spark
      Executor$TaskRunner.run
      1. org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$12.apply(RDD.scala:905)
      2. org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$12.apply(RDD.scala:905)
      3. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1848)
      4. org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1848)
      5. org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
      6. org.apache.spark.scheduler.Task.run(Task.scala:88)
      7. org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
      7 frames
    11. Java RT
      Thread.run
      1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      3. java.lang.Thread.run(Thread.java:745)
      3 frames