java.lang.NoSuchMethodError: org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D

GitHub | vruano | 6 months ago
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  1. 0

    Funny .class version conflict from the gatk public dependency.

    GitHub | 6 months ago | vruano
    java.lang.NoSuchMethodError: org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D

    Root Cause Analysis

    1. java.lang.NoSuchMethodError

      org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D

      at org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc.AlleleFrequencyCalculator.getLog10PNonRef()
    2. org.broadinstitute.hellbender
      GenotypeGVCFs.apply
      1. org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc.AlleleFrequencyCalculator.getLog10PNonRef(AlleleFrequencyCalculator.java:82)
      2. org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypingEngine.calculateGenotypes(GenotypingEngine.java:246)
      3. org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypingEngine.calculateGenotypes(GenotypingEngine.java:201)
      4. org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs.regenotypeVC(GenotypeGVCFs.java:162)
      5. org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs.apply(GenotypeGVCFs.java:145)
      5 frames