java.lang.NoSuchMethodError: org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D

GitHub | vruano | 3 months ago
  1. 0

    Funny .class version conflict from the gatk public dependency.

    GitHub | 3 months ago | vruano
    java.lang.NoSuchMethodError: org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D
  2. 0
    I was using the library hibernate-entitymanager:4.3.5.Final with java persistence API 2.0 instead of using it with hibernate-entitymanager:4.2.8.Final.
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  4. 0

    NoSuchMethodError: mpicbg.models.Boundable.estimateBounds

    GitHub | 2 years ago | psteinb
    java.lang.NoSuchMethodError: mpicbg.models.Boundable.estimateBounds([D[D)V

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    Root Cause Analysis

    1. java.lang.NoSuchMethodError

      org.broadinstitute.hellbender.utils.Dirichlet.log10MeanWeights()[D

      at org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc.AlleleFrequencyCalculator.getLog10PNonRef()
    2. org.broadinstitute.hellbender
      GenotypeGVCFs.apply
      1. org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc.AlleleFrequencyCalculator.getLog10PNonRef(AlleleFrequencyCalculator.java:82)
      2. org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypingEngine.calculateGenotypes(GenotypingEngine.java:246)
      3. org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypingEngine.calculateGenotypes(GenotypingEngine.java:201)
      4. org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs.regenotypeVC(GenotypeGVCFs.java:162)
      5. org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs.apply(GenotypeGVCFs.java:145)
      5 frames