java.lang.RuntimeException: java.lang.reflect.InvocationTargetException

broadinstitute.org | 6 months ago
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    I/O error loading or writing tribble index file for VCF file — GATK-Forum

    broadinstitute.org | 6 months ago
    java.lang.RuntimeException: java.lang.reflect.InvocationTargetException

    Root Cause Analysis

    1. java.lang.RuntimeException

      java.lang.reflect.InvocationTargetException

      at org.broad.tribble.index.IndexFactory.loadIndex()
    2. picard
      IndexFactory.loadIndex
      1. org.broad.tribble.index.IndexFactory.loadIndex(IndexFactory.java:171)
      1 frame
    3. org.broadinstitute.sting
      RMDTrackBuilder.createInstanceOfTrack
      1. org.broadinstitute.sting.gatk.refdata.tracks.RMDTrackBuilder.loadFromDisk(RMDTrackBuilder.java:324)
      2. org.broadinstitute.sting.gatk.refdata.tracks.RMDTrackBuilder.attemptToLockAndLoadIndexFromDisk(RMDTrackBuilder.java:308)
      3. org.broadinstitute.sting.gatk.refdata.tracks.RMDTrackBuilder.loadIndex(RMDTrackBuilder.java:267)
      4. org.broadinstitute.sting.gatk.refdata.tracks.RMDTrackBuilder.getFeatureSource(RMDTrackBuilder.java:213)
      5. org.broadinstitute.sting.gatk.refdata.tracks.RMDTrackBuilder.createInstanceOfTrack(RMDTrackBuilder.java:140)
      5 frames