htsjdk.samtools.SAMException: Value was put into PairInfoMap more than once. 3073: SRR1517848.769506

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via GitHub by PaolaD
, 1 year ago
Value was put into PairInfoMap more than once. 3073: SRR1517848.769506
via GitHub by MatthewRalston
, 1 year ago
Value was put into PairInfoMap more than once. 96: null:NB501257:32:HWCMVBGXX:1:21209:24100:6206
via GitHub by MatthewRalston
, 1 year ago
Value was put into PairInfoMap more than once. 3: null:NB501257:32:HWCMVBGXX:1:21209:24100:6206
via GitHub by MatthewRalston
, 1 year ago
Value was put into PairInfoMap more than once. 3: null:NB501257:32:HWCMVBGXX:1:212$ 9:5229:14102
via GitHub by jjfarrell
, 2 years ago
Value was put into PairInfoMap more than once. 1: E00116:30:H0BL7ALXX:7:2202:27755:2311
via GitHub by Phillip-a-richmond
, 1 year ago
Value was put into PairInfoMap more than once. 2: 17-126946-I:17-126946-I-:::::::::::2548929:0
htsjdk.samtools.SAMException: Value was put into PairInfoMap more than once. 3073: SRR1517848.769506
at htsjdk.samtools.CoordinateSortedPairInfoMap.ensureSequenceLoaded(CoordinateSortedPairInfoMap.java:132)
at htsjdk.samtools.CoordinateSortedPairInfoMap.access$300(CoordinateSortedPairInfoMap.java:53)
at htsjdk.samtools.CoordinateSortedPairInfoMap$MapIterator.advanceToNextNonEmptyReferenceIndex(CoordinateSortedPairInfoMap.java:227)
at htsjdk.samtools.CoordinateSortedPairInfoMap$MapIterator.(CoordinateSortedPairInfoMap.java:221)
at htsjdk.samtools.CoordinateSortedPairInfoMap$MapIterator.(CoordinateSortedPairInfoMap.java:211)
at htsjdk.samtools.CoordinateSortedPairInfoMap.iterator(CoordinateSortedPairInfoMap.java:208)
at htsjdk.samtools.SamFileValidator$CoordinateSortedPairEndInfoMap.iterator(SamFileValidator.java:728)
at htsjdk.samtools.SamFileValidator.validateUnmatchedPairs(SamFileValidator.java:227)
at htsjdk.samtools.SamFileValidator.validateSamFile(SamFileValidator.java:200)
at picard.sam.ValidateSamFile.doWork(ValidateSamFile.java:163)
at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:209)
at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:95)
at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:105)

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