Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via sourceforge.net by Unknown author, 1 year ago
Write error; BinaryCodec in writemode; file: stdout
via seqanswers.com by Unknown author, 2 years ago
Write error; BinaryCodec in writemode; streamed file (filename not available)
via biosupport.se by Unknown author, 1 year ago
Write error; BinaryCodec in writemode; streamed file (filename not available)
via Google Groups by Hong Hur, 10 months ago
Write error; BinaryCodec in writemode; streamed file (filename not available)
java.io.IOException: Broken pipe	at java.io.FileOutputStream.writeBytes(Native Method)	at java.io.FileOutputStream.write(FileOutputStream.java:297)	at net.sf.samtools.util.BinaryCodec.writeBytes(BinaryCodec.java:197)	at net.sf.samtools.util.BinaryCodec.writeByteBuffer(BinaryCodec.java:165)	at net.sf.samtools.util.BinaryCodec.writeByte(BinaryCodec.java:176)	at net.sf.samtools.util.BlockCompressedOutputStream.writeGzipBlock(BlockCompressedOutputStream.java:262)	at net.sf.samtools.util.BlockCompressedOutputStream.deflateBlock(BlockCompressedOutputStream.java:239)	at net.sf.samtools.util.BlockCompressedOutputStream.write(BlockCompressedOutputStream.java:146)	at java.io.DataOutputStream.write(DataOutputStream.java:107)	at net.sf.samtools.util.BinaryCodec.writeBytes(BinaryCodec.java:197)	at net.sf.samtools.util.BinaryCodec.writeBytes(BinaryCodec.java:189)	at net.sf.samtools.BAMRecordCodec.encode(BAMRecordCodec.java:120)	at net.sf.samtools.BAMFileWriter.writeAlignment(BAMFileWriter.java:101)	at net.sf.samtools.SAMFileWriterImpl.addAlignment(SAMFileWriterImpl.java:155)	at net.sf.picard.sam.MarkDuplicates.doWork(MarkDuplicates.java:177)	at net.sf.picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:150)	at net.sf.picard.sam.MarkDuplicates.main(MarkDuplicates.java:93)