Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via Google Groups by Миша Роткевич, 1 year ago
Reference index 322 not found in sequence dictionary.
java.lang.NullPointerException: 	at net.sf.samtools.SAMRecord.setReferenceIndex(