net.sf.samtools.SAMFormatException: SAM validation error: ERROR: Record 7, Read name ST-E00161:151:HKTTVCCXX:4:1101:10013:66830, Mapped mate should have mate reference name

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via Google Groups by Richard, 10 months ago
SAM validation error: ERROR: Record 7, Read name ST-E00161:151:HKTTVCCXX:4:1101:10013:66830, Mapped mate should have mate reference name
via GitHub by AlexanderDilthey
, 1 year ago
SAM validation error: ERROR: Record 561917122, Read name ERR091571.55385293, MAPQ should be 0 for unmapped read.
via GitHub by hgibling
, 1 year ago
SAM validation error: ERROR: Record 561917122, Read name ERR091571.55385293, MAPQ should be 0 for unmapped read.
via GitHub by drchriscole
, 2 years ago
SAM validation error: ERROR: Record 48757728, Read name HWI-ST1398:69:C26EMACXX:8:1101:1239:2242, Mapped mate should have mate reference name
via GitHub by alexpenson
, 9 months ago
SAM validation error: ERROR: Record 109368398, Read name UNC11-SN627:380:C58DMACXX:5:1101:4427:2139, Mapped mate should have mate reference name
net.sf.samtools.SAMFormatException: SAM validation error: ERROR: Record 7, Read name ST-E00161:151:HKTTVCCXX:4:1101:10013:66830, Mapped mate should have mate reference name
at net.sf.samtools.SAMUtils.processValidationErrors(SAMUtils.java:448)
at net.sf.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:506)
at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:487)
at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:446)
at net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:641)
at org.bioinfo.ngs.qc.qualimap.process.ComputeCountsTask.sortSamByName(ComputeCountsTask.java:142)
at org.bioinfo.ngs.qc.qualimap.process.ComputeCountsTask.run(ComputeCountsTask.java:431)
at org.bioinfo.ngs.qc.qualimap.process.RNASeqQCAnalysis.run(RNASeqQCAnalysis.java:68)
at org.bioinfo.ngs.qc.qualimap.main.RnaSeqQcTool.execute(RnaSeqQcTool.java:188)
at org.bioinfo.ngs.qc.qualimap.main.NgsSmartTool.run(NgsSmartTool.java:187)
at org.bioinfo.ngs.qc.qualimap.main.NgsSmartMain.main(NgsSmartMain.java:111)

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