java.lang.AssertionError: assertion failed: Tried to find 'samtools' in '/home/project/avocado/avocado-core/target/scala-2.10.3/classes/htsjdk' but it is not a directory

Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via Google Groups by Unknown author, 1 year ago
assertion failed: Tried to find 'samtools' in '/home/project/avocado/avocado-core/target/scala-2.10.3/classes/htsjdk' but it is not a directory
via Stack Overflow by Gunjan Choudhary
, 7 months ago
assertion failed: Tried to find '$line32' in '/tmp/spark-c9fed3af-e85c-4bbf-b529-b1c9d22e904c' but it is not a directory
via GitHub by CodingCat
, 4 months ago
assertion failed: Tried to find '$line307' in '/tmp/spark-f77b358d-1d4a-4080-ab6d-4120a7a4e760/repl-00b6ec29-fc23-46af-9b40-22a66f0136c0' but it is not a directory
via GitHub by myloginid
, 9 months ago
assertion failed: Tried to find '$line307' in '/tmp/spark-f77b358d-1d4a-4080-ab6d-4120a7a4e760/repl-00b6ec29-fc23-46af-9b40-22a66f0136c0' but it is not a directory
java.lang.AssertionError: assertion failed: Tried to find 'samtools' in '/home/project/avocado/avocado-core/target/scala-2.10.3/classes/htsjdk' but it is not a directory
at scala.tools.nsc.backend.jvm.BytecodeWriters$class.getFile(BytecodeWriters.scala:31)
at scala.tools.nsc.backend.jvm.BytecodeWriters$class.scala$tools$nsc$backend$jvm$BytecodeWriters$$getFile(BytecodeWriters.scala:37)
at scala.tools.nsc.backend.jvm.BytecodeWriters$ClassBytecodeWriter$class.writeClass(BytecodeWriters.scala:89)
at scala.tools.nsc.backend.jvm.GenASM$AsmPhase$$anon$4.writeClass(GenASM.scala:67)
at scala.tools.nsc.backend.jvm.GenASM$JBuilder.writeIfNotTooBig(GenASM.scala:458)
at scala.tools.nsc.backend.jvm.GenASM$JPlainBuilder.genClass(GenASM.scala:1402)
at scala.tools.nsc.backend.jvm.GenASM$AsmPhase.run(GenASM.scala:119)
at scala.tools.nsc.Global$Run.compileUnitsInternal(Global.scala:1583)
at scala.tools.nsc.Global$Run.compileUnits(Global.scala:1557)
at scala.tools.nsc.Global$Run.compileSources(Global.scala:1553)
at scala.tools.nsc.Global$Run.compile(Global.scala:1662)
at xsbt.CachedCompiler0.run(CompilerInterface.scala:123)
at xsbt.CachedCompiler0.run(CompilerInterface.scala:99)
at xsbt.CompilerInterface.run(CompilerInterface.scala:27)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at sbt.compiler.AnalyzingCompiler.call(AnalyzingCompiler.scala:102)
at sbt.compiler.AnalyzingCompiler.compile(AnalyzingCompiler.scala:48)
at sbt.compiler.AnalyzingCompiler.compile(AnalyzingCompiler.scala:41)
at sbt.compiler.AggressiveCompile$$anonfun$3$$anonfun$compileScala$1$1.apply$mcV$sp(AggressiveCompile.scala:99)
at sbt.compiler.AggressiveCompile$$anonfun$3$$anonfun$compileScala$1$1.apply(AggressiveCompile.scala:99)
at sbt.compiler.AggressiveCompile$$anonfun$3$$anonfun$compileScala$1$1.apply(AggressiveCompile.scala:99)
at sbt.compiler.AggressiveCompile.sbt$compiler$AggressiveCompile$$timed(AggressiveCompile.scala:166)
at sbt.compiler.AggressiveCompile$$anonfun$3.compileScala$1(AggressiveCompile.scala:98)
at sbt.compiler.AggressiveCompile$$anonfun$3.apply(AggressiveCompile.scala:143)
at sbt.compiler.AggressiveCompile$$anonfun$3.apply(AggressiveCompile.scala:87)
at sbt.inc.IncrementalCompile$$anonfun$doCompile$1.apply(Compile.scala:39)
at sbt.inc.IncrementalCompile$$anonfun$doCompile$1.apply(Compile.scala:37)
at sbt.inc.IncrementalCommon.cycle(Incremental.scala:99)
at sbt.inc.Incremental$$anonfun$1.apply(Incremental.scala:38)
at sbt.inc.Incremental$$anonfun$1.apply(Incremental.scala:37)
at sbt.inc.Incremental$.manageClassfiles(Incremental.scala:65)
at sbt.inc.Incremental$.compile(Incremental.scala:37)
at sbt.inc.IncrementalCompile$.apply(Compile.scala:27)
at sbt.compiler.AggressiveCompile.compile2(AggressiveCompile.scala:157)
at sbt.compiler.AggressiveCompile.compile1(AggressiveCompile.scala:71)
at com.typesafe.zinc.Compiler.compile(Compiler.scala:193)
at com.typesafe.zinc.Compiler.compile(Compiler.scala:174)
at com.typesafe.zinc.Main$.run(Main.scala:98)
at com.typesafe.zinc.Nailgun$.zinc(Nailgun.scala:93)
at com.typesafe.zinc.Nailgun$.nailMain(Nailgun.scala:82)
at com.typesafe.zinc.Nailgun.nailMain(Nailgun.scala)
at sun.reflect.GeneratedMethodAccessor3.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)

Users with the same issue

You are the first who have seen this exception.

Write tip

Know the solutions? Share your knowledge to help other developers to debug faster.