java.lang.IllegalArgumentException: Wrong FS: hdfs:// hh-rover10-1.ebi.ac.uk:8020/user/iakhnin/na12878/NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam, expected: file:///

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via Google Groups by Sergei Iakhnin, 10 months ago
Wrong FS: hdfs:// hh-rover10-1.ebi.ac.uk:8020/user/iakhnin/na12878/NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam, expected: file:///
via GitHub by beaunorgeot
, 1 year ago
Wrong FS: hdfs://spark-master:8020/C835.HCC1143_BL._.bam, expected: file:///
via techidiocy.com by Unknown author, 10 months ago
Wrong FS: hdfs://ibc.techidiocy.com:8020/user/saurav/input.txt, expected: file:///
via GitHub by srowen
, 1 year ago
Wrong FS: hdfs://cdh-oryx2-manager:8020/user/oryx/model/1452520731171/model.pmml, expected: file:///
via GitHub by heuermh
, 1 year ago
Wrong FS: hdfs://localhost:54310/vcf_pruebas/vcfpruebas2.vcf_head, expected: file:///
java.lang.IllegalArgumentException: Wrong FS: hdfs:// hh-rover10-1.ebi.ac.uk:8020/user/iakhnin/na12878/NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam, expected: file:///
at org.apache.hadoop.fs.FileSystem.checkPath(FileSystem.java:645)
at org.apache.hadoop.fs.RawLocalFileSystem.pathToFile(RawLocalFileSystem.java:80)
at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:519)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:737)
at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:514)
at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:398)
at org.bdgenomics.adam.rdd.ADAMContext.loadBam(ADAMContext.scala:237)
at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:516)
at org.bdgenomics.adam.rdd.ADAMContext$$anonfun$loadAlignments$1.apply(ADAMContext.scala:513)
at org.bdgenomics.adam.rdd.ADAMContext.loadAlignments(ADAMContext.scala:511)
at org.bdgenomics.adam.cli.Transform.run(Transform.scala:148)
at org.bdgenomics.utils.cli.BDGSparkCommand$class.run(BDGCommand.scala:53)
at org.bdgenomics.adam.cli.Transform.run(Transform.scala:85)
at org.bdgenomics.adam.cli.ADAMMain$.main(ADAMMain.scala:105)
at org.bdgenomics.adam.cli.ADAMMain.main(ADAMMain.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)

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