java.lang.ClassCastException: org.apache.avro.generic.GenericData$Record cannot be cast to org.bdgenomics.formats.avro.NucleotideContigFragment

Google Groups | Sungwook Yoon | 2 years ago
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  1. 0

    avocado class cast error

    Google Groups | 2 years ago | Sungwook Yoon
    java.lang.ClassCastException: org.apache.avro.generic.GenericData$Record cannot be cast to org.bdgenomics.formats.avro.NucleotideContigFragment
  2. 0

    avocado error reading adam files

    Google Groups | 2 years ago | Sungwook Yoon
    java.lang.ClassCastException: org.apache.avro.generic.GenericData$Recor d cannot be cast to org.bdgenomics.formats.avro.NucleotideContigFragment

    Root Cause Analysis

    1. java.lang.ClassCastException

      org.apache.avro.generic.GenericData$Record cannot be cast to org.bdgenomics.formats.avro.NucleotideContigFragment

      at org.bdgenomics.adam.rdd.contig.NucleotideContigFragmentRDDFunctions.getSequenceRecordsFromElement()
    2. org.bdgenomics.adam
      NucleotideContigFragmentRDDFunctions.getSequenceRecordsFromElement
      1. org.bdgenomics.adam.rdd.contig.NucleotideContigFragmentRDDFunctions.getSequenceRecordsFromElement(NucleotideContigFragmentRDDFunctions.scala:41)
      1 frame