java.lang.RuntimeException

No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment.

Solutions on the web52598

  • via Google Groups by Unknown author, 1 year ago
    No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment.
  • No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment.
  • via Google Groups by Chirag Krishna, 2 weeks ago
    No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment.
  • Stack trace

    • java.lang.RuntimeException: No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment. at juicebox.tools.utils.original.Preprocessor$MatrixZoomDataPP.mergeAndWriteBlocks(Preprocessor.java:1387) at juicebox.tools.utils.original.Preprocessor$MatrixZoomDataPP.access$000(Preprocessor.java:1158) at juicebox.tools.utils.original.Preprocessor.writeMatrix(Preprocessor.java:572) at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:303) at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:213) at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:94) at juicebox.tools.HiCTools.main(HiCTools.java:77)

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