java.lang.IllegalStateException

Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 4023 --cut_tc data/tigrfam/13.0/TIGRFAMs_13.0_HMM.LIB temp/node16.cluster2.keygene.local_20130424_092824227_69cx/jobTIGRFAM-13.0/000000029501_000000029600.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed

Solutions on the web14609

  • via Google Groups by Unknown author, 6 months ago
    Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 4023 --cut_tc data/tigrfam/13.0/TIGRFAMs_13.0_HMM.LIB temp/node16.cluster2.keygene.local_20130424_092824227_69cx/jobTIGRFAM-13.0/000000029501_000000029600.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed
  • via GitHub by dlepp
    , 9 months ago
    Command line failed with exit code: 255 Command: perl -I bin/panther/pantherScore/1.04/lib bin/panther/pantherScore/1.04/pantherScore.pl -l /media/4tb1/Users/leppd/Shared/Panther -D I -E 1e-3 -n -c 1 -B bin/blast/2.2.24/bin/blastall -H bin/hmmer
  • via Google Groups by Josef Schmitz, 6 months ago
    Command line failed with exit code: 141 Command: bin/ps_scan.pl -d data/prosite/20.66/prosite.dat --pfscan bin/ pfscan -s -m -o gff temp/dell- node-4.mpipz.mpg.de_20120515_120040054_154q/jobPrositeProfiles/ 000000000001_000000000001.fasta Error
  • Stack trace

    • java.lang.IllegalStateException: Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 4023 --cut_tc data/tigrfam/13.0/TIGRFAMs_13.0_HMM.LIB temp
    • ode16.cluster2.keygene.local_20130424_092824227_69cx/jobTIGRFAM-13.0/000000029501_000000029600.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:126) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:84) at sun.reflect.GeneratedMethodAccessor66.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:319) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy94.executeInTransaction(Unknown Source) at uk.ac.ebi.interpro.scan.jms.activemq.WorkerListener.onMessage(WorkerListener.java:102) at org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:562) at org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:500) at org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:468) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:326) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:264) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1071) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1063) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:960) at java.lang.Thread.run(Thread.java:662)

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