java.lang.IllegalStateException: Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 13672 --cut_ga data/pfam/26.0/Pfam-A.hmm temp/node16.cluster2.keygene.local_20130424_092824227_69cx/jobPfamA-26.0/000000008301_000000008400.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed


Solutions on the web

Solution icon of googlegroups
via Google Groups by Unknown author, 9 months ago
Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 13672 --cut_ga data/pfam/26.0/Pfam-A.hmm temp/node16.cluster2.keygene.local_20130424_092824227_69cx/jobPfamA-26.0/000000008301_000000008400.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed

Solution icon of github
via GitHub by dlepp
, 1 year ago
Command line failed with exit code: 255 Command: perl -I bin/panther/pantherScore/1.04/lib bin/panther/pantherScore/1.04/pantherScore.pl -l /media/4tb1/Users/leppd/Shared/Panther -D I -E 1e-3 -n -c 1 -B bin/blast/2.2.24/bin/blastall -H bin/hmmer

Solution icon of googlegroups
via Google Groups by Josef Schmitz, 9 months ago
Command line failed with exit code: 141 Command: bin/ps_scan.pl -d data/prosite/20.66/prosite.dat --pfscan bin/ pfscan -s -m -o gff temp/dell- node-4.mpipz.mpg.de_20120515_120040054_154q/jobPrositeProfiles/ 000000000001_000000000001.fasta Error

Solution icon of github
via GitHub by tcfhcdg
, 5 months ago
Command line failed with exit code: 1 Command: bin/sfld/sfld_postprocess -s data/sfld/2/sfld_sites.annot -a /home/tb44227/temp/lido-bl23041_20170308_170416446_6lyw//jobSFLD/000000000001_000000000003.raw.align.out -O /home/tb44227/temp/lido

Solution icon of github
via GitHub by mpevs
, 2 months ago
Command line failed with exit code: 1 Command: bin/sfld/sfld_postprocess -s data/sfld/2/sfld_sites.annot -a /users/40099203/my_interproscan/interproscan-5.25-64.0/temp/login2.prv.kelvin.compute.estate_20170726_174700200_e8hi//jobSFLD


Stack trace

java.lang.IllegalStateException: Command line failed with exit code: 134
 Command: bin/hmmer/hmmer3/hmmsearch -Z 13672 --cut_ga 
 data/pfam/26.0/Pfam-A.hmm 
 tempode16.cluster2.keygene.local_20130424_092824227_69cx/jobPfamA-26.0/000000008301_000000008400.fasta 
 Error output from binary:
 Fatal exception (source file esl_threads.c, line 129):
 thread creation failed
	at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:126)
	at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:84)
	at sun.reflect.GeneratedMethodAccessor66.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:319)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy94.executeInTransaction(Unknown Source)
	at uk.ac.ebi.interpro.scan.jms.activemq.WorkerListener.onMessage(WorkerListener.java:102)
	at org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:562)
	at org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:500)
	at org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:468)
	at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:326)
	at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:264)
	at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1071)
	at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1063)
	at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:960)
	at java.lang.Thread.run(Thread.java:662)

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