java.lang.IllegalStateException

Attempting to create a Gene3D match that has no alignment data.

Solutions on the web22492

  • Attempting to create a Gene3D match that has no alignment data.
  • Afterburner internal error: BeanDeserializer for [simple type, class Envelope] has no properties that match expected ordering -- can not create optimized deserializer
  • via JIRA by Muhammad, 7 months ago
    Attempting to flush a pool that does not appear to have successfully initialized. Aborting.
  • Stack trace

    • java.lang.IllegalStateException: Attempting to create a Gene3D match that has no alignment data. at uk.ac.ebi.interpro.scan.io.match.hmmer.hmmer3.Gene3DHmmer3ParserSupport.createMatch(Gene3DHmmer3ParserSupport.java:32) at uk.ac.ebi.interpro.scan.io.match.hmmer.hmmer3.Gene3DHmmer3ParserSupport.createMatch(Gene3DHmmer3ParserSupport.java:16) at uk.ac.ebi.interpro.scan.io.match.hmmer.hmmer3.AbstractHmmer3ParserSupport.addMatch(AbstractHmmer3ParserSupport.java:85) at uk.ac.ebi.interpro.scan.io.match.hmmer.hmmer3.Gene3DHmmer3ParserSupport.addMatch(Gene3DHmmer3ParserSupport.java:16) at uk.ac.ebi.interpro.scan.io.match.hmmer.hmmer3.Hmmer3SearchMatchParser.parse(Hmmer3SearchMatchParser.java:183) at uk.ac.ebi.interpro.scan.management.model.implementations.ParseStep.execute(ParseStep.java:66) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:82) at sun.reflect.GeneratedMethodAccessor62.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:318) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy90.executeInTransaction(Unknown Source) at uk.ac.ebi.interpro.scan.jms.activemq.AmqInterProScanWorker.onMessage(AmqInterProScanWorker.java:96) at org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:561) at org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:499) at org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:467) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:325) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:263) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1059) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1051) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:948) at java.lang.Thread.run(Thread.java:662)

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