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via Google Groups by Josef Schmitz, 1 year ago
Command line failed with exit code: 141 Command: bin/ps_scan.pl -d data/prosite/20.66/prosite.dat --pfscan bin/ pfscan -s -m -o gff temp/dell- node-4.mpipz.mpg.de_20120515_120040054_154q/jobPrositeProfiles/ 000000000001_000000000001.fasta Error
via Google Groups by Unknown author, 1 year ago
Command line failed with exit code: 134 Command: bin/hmmer/hmmer3/hmmsearch -Z 13672 --cut_ga data/pfam/26.0/Pfam-A.hmm temp/node16.cluster2.keygene.local_20130424_092824227_69cx/jobPfamA-26.0/000000014401_000000014500.fasta Error output from binary: Fatal exception (source file esl_threads.c, line 129): thread creation failed
via GitHub by wangxf133
, 2 months ago
Command line failed with exit code: 25 Command: bin/prosite/ps_scan.pl -d data/prosite/2017_09/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2017_09/prosite_models /mnt/e/Interproscan/interproscan-5.28-67.0/temp/DESKTOP
via GitHub by rafiko1
, 2 weeks ago
Command line failed with exit code: 25 Command: bin/prosite/ps_scan.pl -d data/prosite/2018_02/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2018_02/prosite_models /home/rafiko1/my_interproscan/interproscan-5.29-68.0/temp/LAPTOP
via GitHub by wangzhennan14
, 2 weeks ago
Command line failed with exit code: 17 Command: bin/prosite/ps_scan.pl -d data/prosite/2017_09/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2017_09/prosite_models /vol2/agis/ruanjue_group/wangzhennan/assembly/wuhan-reannot/ips
via GitHub by diecasfranco
, 5 months ago
/000000004001_000000005000.fasta -db /home/dfranco/interproscan/interproscan-5.25-64.0/data/cdd/3.16/db/Cdd_NCBI -evalue 0.01 -seg no -outfmt 5 Error output from binary: /home/dfranco/interproscan/interproscan-5.25-64.0/bin/blast/ncbi-blast-2.6.0+/rpsblast: error while loading shared libraries: libgnutls.so.28: cannot open shared object file: No such file or directory
java.lang.IllegalStateException: Command line failed with exit code:141Command: bin/ps_scan.pl -d data/prosite/20.66/prosite.dat --pfscan bin/pfscan -s -m -o gff temp/dell-node-4.mpipz.mpg.de_20120515_120040054_154q/jobPrositeProfiles/000000000001_000000000001.fastaError output from binary:bin/pfscan: error while loading shared libraries: libg2c.so.0: cannotopen shared object file: No such file or directory at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:125) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:83) at sun.reflect.GeneratedMethodAccessor54.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy78.executeInTransaction(Unknown Source) at uk.ac.ebi.interpro.scan.jms.activemq.AmqInterProScanWorker.onMessage(AmqInterProScanWorker.java:96) at org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:560) at org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:498) at org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:467) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:325) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:263) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1058) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1050) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:947) at java.lang.Thread.run(Thread.java:662)