java.lang.IllegalArgumentException: FilterGenotypeTable: init: start site: 1989 is larger than end site: 1988

Google Groups | Unknown author | 6 months ago
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  1. 0

    FILLIN chromosome break error

    Google Groups | 6 months ago | Unknown author
    java.lang.IllegalArgumentException: FilterGenotypeTable: init: start site: 1989 is larger than end site: 1988

    Root Cause Analysis

    1. java.lang.IllegalArgumentException

      FilterGenotypeTable: init: start site: 1989 is larger than end site: 1988

      at net.maizegenetics.dna.snp.FilterGenotypeTable.<init>()
    2. net.maizegenetics.dna
      FilterGenotypeTable.getInstance
      1. net.maizegenetics.dna.snp.FilterGenotypeTable.<init>(FilterGenotypeTable.java:214)
      2. net.maizegenetics.dna.snp.FilterGenotypeTable.getInstance(FilterGenotypeTable.java:455)
      2 frames
    3. net.maizegenetics.analysis
      FILLINFindHaplotypesPlugin.processData
      1. net.maizegenetics.analysis.imputation.FILLINFindHaplotypesPlugin.createHaplotypeAlignment(FILLINFindHaplotypesPlugin.java:183)
      2. net.maizegenetics.analysis.imputation.FILLINFindHaplotypesPlugin.processData(FILLINFindHaplotypesPlugin.java:166)
      2 frames
    4. net.maizegenetics.plugindef
      ThreadedPluginListener.run
      1. net.maizegenetics.plugindef.AbstractPlugin.performFunction(AbstractPlugin.java:110)
      2. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1652)
      3. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)
      3 frames
    5. Java RT
      Thread.run
      1. java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
      2. java.util.concurrent.FutureTask.run(FutureTask.java:266)
      3. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
      4. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
      5. java.lang.Thread.run(Thread.java:745)
      5 frames