java.lang.NullPointerException

Google Groups | neha roy | 6 months ago
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Root Cause Analysis

  1. java.lang.NullPointerException

    No message provided

    at net.maizegenetics.dna.snp.CoreGenotypeTable.genotypeAllTaxa()
  2. net.maizegenetics.dna
    CoreGenotypeTable.genotypeAllTaxa
    1. net.maizegenetics.dna.snp.CoreGenotypeTable.genotypeAllTaxa(CoreGenotypeTable.java:105)
    1 frame
  3. net.maizegenetics.analysis
    EndelmanDistanceMatrix$EndelmanSiteSpliterator.forEachRemaining
    1. net.maizegenetics.analysis.distance.EndelmanDistanceMatrix$EndelmanSiteSpliterator.getBlockOfSites(EndelmanDistanceMatrix.java:531)
    2. net.maizegenetics.analysis.distance.EndelmanDistanceMatrix$EndelmanSiteSpliterator.forEachRemaining(EndelmanDistanceMatrix.java:441)
    2 frames
  4. Java RT
    ReferencePipeline.reduce
    1. java.util.stream.AbstractPipeline.copyInto(Unknown Source)
    2. java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
    3. java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
    4. java.util.stream.ReduceOps$ReduceTask.doLeaf(Unknown Source)
    5. java.util.stream.AbstractTask.compute(Unknown Source)
    6. java.util.concurrent.CountedCompleter.exec(Unknown Source)
    7. java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
    8. java.util.concurrent.ForkJoinTask.doInvoke(Unknown Source)
    9. java.util.concurrent.ForkJoinTask.invoke(Unknown Source)
    10. java.util.stream.ReduceOps$ReduceOp.evaluateParallel(Unknown Source)
    11. java.util.stream.AbstractPipeline.evaluate(Unknown Source)
    12. java.util.stream.ReferencePipeline.reduce(Unknown Source)
    12 frames
  5. net.maizegenetics.analysis
    KinshipPlugin.processData
    1. net.maizegenetics.analysis.distance.EndelmanDistanceMatrix.computeEndelmanDistances(EndelmanDistanceMatrix.java:121)
    2. net.maizegenetics.analysis.distance.EndelmanDistanceMatrix.getInstance(EndelmanDistanceMatrix.java:97)
    3. net.maizegenetics.analysis.distance.KinshipPlugin.processData(KinshipPlugin.java:117)
    3 frames
  6. net.maizegenetics.plugindef
    ThreadedPluginListener.run
    1. net.maizegenetics.plugindef.AbstractPlugin.performFunction(AbstractPlugin.java:110)
    2. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1652)
    3. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)[Thread-13]
    3 frames