java.lang.IllegalStateException

Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed.

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Solutions on the web25936

  • via Google Groups by Marlee Labroo, 6 months ago
    Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed.
  • via GitHub by chinchliff
    , 8 months ago
    Two or more nodes were found matching the root taxon `Campanulaceae` (ottId=1086303) for context Campanulaceae. Have you already installed a (partial) taxonomy into this database?
  • via Coderanch by Lubo Kanev, 7 months ago
    WebAppBuilder not found in SystemInstance. Ensure the following entry exists in the Tomcat server.xml file: <Listener className="org.apache.tomee.catalina.ServerListener"/>
  • Stack trace

    • java.lang.IllegalStateException: Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed. at net.maizegenetics.dna.snp.GenotypeTableBuilder.addTaxon(GenotypeTableBuilder.java:743) at net.maizegenetics.dna.snp.GenotypeTableBuilder.addTaxon(GenotypeTableBuilder.java:575) at net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.callGenotypes(ProductionSNPCallerPluginV2.java:294) at net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.lambda$processData$105(ProductionSNPCallerPluginV2.java:264) at java.util.Iterator.forEachRemaining(Unknown Source) at java.util.Spliterators$IteratorSpliterator.forEachRemaining(Unknown Source) at java.util.stream.ReferencePipeline$Head.forEach(Unknown Source) at net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.processData(ProductionSNPCallerPluginV2.java:263) at net.maizegenetics.plugindef.AbstractPlugin.performFunction(AbstractPlugin.java:110) at net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1645) at net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source)[pool-1-thread-1]

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