java.lang.IllegalStateException: Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed.

Google Groups | Marlee Labroo | 7 months ago
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    error: number of sites and genotypes do not agree

    Google Groups | 7 months ago | Marlee Labroo
    java.lang.IllegalStateException: Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed.

    Root Cause Analysis

    1. java.lang.IllegalStateException

      Taxon [] already exists in the HDF5 file. Dupl icated taxa not allowed.

      at net.maizegenetics.dna.snp.GenotypeTableBuilder.addTaxon()
    2. net.maizegenetics.dna
      GenotypeTableBuilder.addTaxon
      1. net.maizegenetics.dna.snp.GenotypeTableBuilder.addTaxon(GenotypeTableBuilder.java:743)
      2. net.maizegenetics.dna.snp.GenotypeTableBuilder.addTaxon(GenotypeTableBuilder.java:575)
      2 frames
    3. net.maizegenetics.analysis
      ProductionSNPCallerPluginV2.lambda$processData$105
      1. net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.callGenotypes(ProductionSNPCallerPluginV2.java:294)
      2. net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.lambda$processData$105(ProductionSNPCallerPluginV2.java:264)
      2 frames
    4. Java RT
      ReferencePipeline$Head.forEach
      1. java.util.Iterator.forEachRemaining(Unknown Source)
      2. java.util.Spliterators$IteratorSpliterator.forEachRemaining(Unknown Source)
      3. java.util.stream.ReferencePipeline$Head.forEach(Unknown Source)
      3 frames
    5. net.maizegenetics.analysis
      ProductionSNPCallerPluginV2.processData
      1. net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2.processData(ProductionSNPCallerPluginV2.java:263)
      1 frame
    6. net.maizegenetics.plugindef
      ThreadedPluginListener.run
      1. net.maizegenetics.plugindef.AbstractPlugin.performFunction(AbstractPlugin.java:110)
      2. net.maizegenetics.plugindef.AbstractPlugin.dataSetReturned(AbstractPlugin.java:1645)
      3. net.maizegenetics.plugindef.ThreadedPluginListener.run(ThreadedPluginListener.java:29)
      3 frames
    7. Java RT
      Thread.run
      1. java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
      2. java.util.concurrent.FutureTask.run(Unknown Source)
      3. java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
      4. java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
      5. java.lang.Thread.run(Unknown Source)[pool-1-thread-1]
      5 frames