java.lang.RuntimeException

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  • No reads in Hi-C contact map
    via by Unknown author,
  • input files with no restriction fragments information
    via by Unknown author,
  • Problem in juicebox48g (Java program)
    via by Zhong Wang,
  • Warning: Unable to process fragment file.
    via by Unknown author,
  • No reads in Hi-C contact matrix issue
    via by Unknown author,
  • merged_nodups.txt as input to juicebox
    via by tyler borrman,
  • GitHub comment 49#228002057
    via GitHub by Krannich479
    ,
    • java.lang.RuntimeException: No reads in Hi-C contact matrices. This could be because the MAPQ filter is set too high (-q) or because all reads map to the same fragment. at juicebox.tools.utils.original.Preprocessor$MatrixZoomDataPP.mergeAndWriteBlocks(Preprocessor.java:1397) at juicebox.tools.utils.original.Preprocessor$MatrixZoomDataPP.access$000(Preprocessor.java:1168) at juicebox.tools.utils.original.Preprocessor.writeMatrix(Preprocessor.java:582) at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:313) at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:223) at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:98) at juicebox.tools.HiCTools.main(HiCTools.java:77)
    No Bugmate found.