org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 0.0 failed 1 times, most recent failure: Lost task 1.0 in stage 0.0 (TID 1, localhost): java.lang.ArrayStoreException: org.bdgenomics.formats.avro.Genotype


Solutions on the web

Solution icon of github
via GitHub by heuermh
, 9 months ago
Job aborted due to stage failure: Task 1 in stage 0.0 failed 1 times, most recent failure: Lost task 1.0 in stage 0.0 (TID 1, localhost): java.lang.ArrayStoreException: org.bdgenomics.formats.avro.Genotype

Solution icon of web
via nabble.com by Unknown author, 1 year ago
Job aborted due to stage failure: Task 0 in stage 37.0 failed 1 times, most recent failure: Lost task 0.0 in stage 37.0 (TID 73, localhost): java.lang.ArrayStoreException: org.apache.spark.sql.catalyst.expressions.GenericRowWithSchema

Solution icon of stackoverflow
via Stack Overflow by LearningSlowly
, 1 year ago
Job aborted due to stage failure: Task 0 in stage 15.0 failed 1 times, most recent failure: Lost task 0.0 in stage 15.0 (TID 13, localhost): java.lang.ArrayStoreException: java.lang.Long

Solution icon of stackoverflow
via Stack Overflow by DaliMidou
, 7 months ago
Job aborted due to stage failure: Task 0 in stage 28.0 failed 1 times, most recent failure: Lost task 0.0 in stage 28.0 (TID 46, localhost): java.lang.ArrayStoreException: scala.collection.mutable.MutableList

Solution icon of stackoverflow
Job aborted due to stage failure: Task 0 in stage 28.0 failed 1 times, most recent failure: Lost task 0.0 in stage 28.0 (TID 46, localhost): java.lang.ArrayStoreException: scala.collection.mutable.MutableList

Solution icon of web
Job aborted due to stage failure: Task 0 in stage 1.0 failed 1 times, most recent failure: Lost task 0.0 in stage 1.0 (TID 3, localhost): java.lang.ArrayStoreException: org.apache.avro.generic.GenericData$Record

Solution icon of googlegroups
via Google Groups by Unknown author, 9 months ago
Job aborted due to stage failure: Task 0 in stage 0.0 failed 4 times, most recent failure: Lost task 0.3 in stage 0.0 (TID 3, cluster-3-w-0.c.abc-def-00-0000.internal): java.lang.ArrayStoreException: org.apache.avro.generic.GenericData$Record

Solution icon of web
Job aborted due to stage failure: Task 0 in stage 2657.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2657.0 (TID 800, 10.0.193.24): java.lang.ArrayStoreException: scala.Tuple2

Solution icon of googlegroups
via Google Groups by Sungwook Yoon, 9 months ago
Job aborted due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent failure: Lost task 0.3 in stage 1.0 (TID 7, aday3): java.lang.ArrayStoreException: org.apache.avro.generic.GenericData$Record

Stack trace

org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 0.0 failed 1 times, most recent failure: Lost task 1.0 in stage 0.0 (TID 1, localhost): java.lang.ArrayStoreException: org.bdgenomics.formats.avro.Genotype
	at scala.runtime.ScalaRunTime$.array_update(ScalaRunTime.scala:88)
	at scala.Array$.slowcopy(Array.scala:81)
	at scala.Array$.copy(Array.scala:107)
	at scala.collection.mutable.ResizableArray$class.copyToArray(ResizableArray.scala:77)
	at scala.collection.mutable.ArrayBuffer.copyToArray(ArrayBuffer.scala:47)
	at scala.collection.TraversableOnce$class.copyToArray(TraversableOnce.scala:241)
	at scala.collection.AbstractTraversable.copyToArray(Traversable.scala:105)
	at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:249)
	at scala.collection.AbstractTraversable.toArray(Traversable.scala:105)
	at scala.collection.TraversableOnce$class.toArray(TraversableOnce.scala:252)
	at scala.collection.AbstractIterator.toArray(Iterator.scala:1157)
	at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$12.apply(RDD.scala:927)
	at org.apache.spark.rdd.RDD$$anonfun$collect$1$$anonfun$12.apply(RDD.scala:927)
	at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
	at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1858)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
	at org.apache.spark.scheduler.Task.run(Task.scala:89)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:227)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)

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