psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.

GitHub | colin-combe | 1 week ago
  1. 0

    Accept attributes enclosed in single quotes

    GitHub | 1 week ago | colin-combe
    psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.
  2. 0

    Psi-core/factory - tests generate stacktrace

    GitHub | 5 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  3. 0

    GitHub comment 17#238520716

    GitHub | 5 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  4. Speed up your debug routine!

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  5. 0

    mitab: split encapsulated parethesis for species

    GitHub | 1 year ago | arnaudceol
    java.lang.RuntimeException: Error while reading the file.
  6. 0

    GitHub comment 7#95097740

    GitHub | 2 years ago | GoogleCodeExporter
    psidev.psi.mi.tab.PsimiTabException: Exception parsing line 0: [ID interactor A, ID interactor B, Alt. ID interactor A, Alt. ID interactor B, Alias(es) interactor A, Alias(es) interactor B, Interaction detection method(s), Publication 1st author(s), Publication Identifier(s), Taxid interactor A, Taxid interactor B, Interaction type(s), Source database(s), Interaction identifier(s), Confidence value(s)]

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Root Cause Analysis

  1. java.lang.StringIndexOutOfBoundsException

    String index out of range: -1

    at java.lang.String.substring()
  2. Java RT
    String.substring
    1. java.lang.String.substring(String.java:1967)
    1 frame
  3. psidev.psi.mi
    ReadWriteJsonWithJami.main
    1. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.buildPositionIndex(PsiXmlFileIndexCache.java:815)
    2. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.<init>(PsiXmlFileIndexCache.java:127)
    3. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseDefaultCache(AbstractPsiXmlParser.java:1010)
    4. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseEntryContext(AbstractPsiXmlParser.java:1001)
    5. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.parseNextInteraction(AbstractPsiXmlParser.java:164)
    6. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.processNextBinary(AbstractXmlIterator.java:39)
    7. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.<init>(AbstractXmlIterator.java:31)
    8. psidev.psi.mi.jami.xml.io.iterator.XmlInteractionEvidenceIterator.<init>(XmlInteractionEvidenceIterator.java:17)
    9. psidev.psi.mi.jami.xml.model.extension.datasource.XmlEvidenceStreamSource.createXmlIterator(XmlEvidenceStreamSource.java:84)
    10. psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream.getInteractionsIterator(AbstractPsiXmlStream.java:108)
    11. psidev.psi.mi.jami.xml.model.extension.datasource.DefaultPsiXmlStreamSource.getInteractionsIterator(DefaultPsiXmlStreamSource.java:44)
    12. psidev.psi.mi.jami.examples.interactionviewer.ReadWriteJsonWithJami.main(ReadWriteJsonWithJami.java:79)
    12 frames