psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.

GitHub | colin-combe | 3 months ago
tip
Your exception is missing from the Samebug knowledge base.
Here are the best solutions we found on the Internet.
Click on the to mark the helpful solution and get rewards for you help.
  1. 0

    Accept attributes enclosed in single quotes

    GitHub | 3 months ago | colin-combe
    psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.
  2. 0

    Psi-core/factory - tests generate stacktrace

    GitHub | 8 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  3. 0

    GitHub comment 17#238520716

    GitHub | 8 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    mitab: split encapsulated parethesis for species

    GitHub | 1 year ago | arnaudceol
    java.lang.RuntimeException: Error while reading the file.
  6. 0

    GitHub comment 7#95097740

    GitHub | 2 years ago | GoogleCodeExporter
    psidev.psi.mi.tab.PsimiTabException: Exception parsing line 0: [ID interactor A, ID interactor B, Alt. ID interactor A, Alt. ID interactor B, Alias(es) interactor A, Alias(es) interactor B, Interaction detection method(s), Publication 1st author(s), Publication Identifier(s), Taxid interactor A, Taxid interactor B, Interaction type(s), Source database(s), Interaction identifier(s), Confidence value(s)]

  1. Indri Yunita 7 times, last 3 weeks ago
  2. osvzs 1 times, last 4 weeks ago
  3. Pilleo 1 times, last 1 month ago
  4. Andreas Häber 2 times, last 1 month ago
  5. QrCeric 1 times, last 2 months ago
25 more registered users
59 unregistered visitors
Not finding the right solution?
Take a tour to get the most out of Samebug.

Tired of useless tips?

Automated exception search integrated into your IDE

Root Cause Analysis

  1. java.lang.StringIndexOutOfBoundsException

    String index out of range: -1

    at java.lang.String.substring()
  2. Java RT
    String.substring
    1. java.lang.String.substring(String.java:1967)
    1 frame
  3. psidev.psi.mi
    ReadWriteJsonWithJami.main
    1. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.buildPositionIndex(PsiXmlFileIndexCache.java:815)
    2. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.<init>(PsiXmlFileIndexCache.java:127)
    3. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseDefaultCache(AbstractPsiXmlParser.java:1010)
    4. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseEntryContext(AbstractPsiXmlParser.java:1001)
    5. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.parseNextInteraction(AbstractPsiXmlParser.java:164)
    6. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.processNextBinary(AbstractXmlIterator.java:39)
    7. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.<init>(AbstractXmlIterator.java:31)
    8. psidev.psi.mi.jami.xml.io.iterator.XmlInteractionEvidenceIterator.<init>(XmlInteractionEvidenceIterator.java:17)
    9. psidev.psi.mi.jami.xml.model.extension.datasource.XmlEvidenceStreamSource.createXmlIterator(XmlEvidenceStreamSource.java:84)
    10. psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream.getInteractionsIterator(AbstractPsiXmlStream.java:108)
    11. psidev.psi.mi.jami.xml.model.extension.datasource.DefaultPsiXmlStreamSource.getInteractionsIterator(DefaultPsiXmlStreamSource.java:44)
    12. psidev.psi.mi.jami.examples.interactionviewer.ReadWriteJsonWithJami.main(ReadWriteJsonWithJami.java:79)
    12 frames