psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.

GitHub | colin-combe | 4 months ago
tip
Do you know that we can give you better hits? Get more relevant results from Samebug’s stack trace search.
  1. 0

    Accept attributes enclosed in single quotes

    GitHub | 4 months ago | colin-combe
    psidev.psi.mi.jami.exception.MIIOException: Impossible to read next interaction.
  2. 0

    Psi-core/factory - tests generate stacktrace

    GitHub | 9 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  3. 0

    GitHub comment 17#238520716

    GitHub | 9 months ago | julie-sullivan
    java.lang.IllegalArgumentException: no source option
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    mitab: split encapsulated parethesis for species

    GitHub | 1 year ago | arnaudceol
    java.lang.RuntimeException: Error while reading the file.
  6. 0

    GitHub comment 7#95097740

    GitHub | 2 years ago | GoogleCodeExporter
    psidev.psi.mi.tab.PsimiTabException: Exception parsing line 0: [ID interactor A, ID interactor B, Alt. ID interactor A, Alt. ID interactor B, Alias(es) interactor A, Alias(es) interactor B, Interaction detection method(s), Publication 1st author(s), Publication Identifier(s), Taxid interactor A, Taxid interactor B, Interaction type(s), Source database(s), Interaction identifier(s), Confidence value(s)]

  1. osvzs 2 times, last 6 days ago
  2. Indri Yunita 7 times, last 2 months ago
  3. Pilleo 1 times, last 2 months ago
  4. Andreas Häber 2 times, last 2 months ago
  5. QrCeric 1 times, last 3 months ago
25 more registered users
59 unregistered visitors
Not finding the right solution?
Take a tour to get the most out of Samebug.

Tired of useless tips?

Automated exception search integrated into your IDE

Root Cause Analysis

  1. java.lang.StringIndexOutOfBoundsException

    String index out of range: -1

    at java.lang.String.substring()
  2. Java RT
    String.substring
    1. java.lang.String.substring(String.java:1967)
    1 frame
  3. psidev.psi.mi
    ReadWriteJsonWithJami.main
    1. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.buildPositionIndex(PsiXmlFileIndexCache.java:815)
    2. psidev.psi.mi.jami.xml.cache.PsiXmlFileIndexCache.<init>(PsiXmlFileIndexCache.java:127)
    3. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseDefaultCache(AbstractPsiXmlParser.java:1010)
    4. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.initialiseEntryContext(AbstractPsiXmlParser.java:1001)
    5. psidev.psi.mi.jami.xml.io.parser.AbstractPsiXmlParser.parseNextInteraction(AbstractPsiXmlParser.java:164)
    6. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.processNextBinary(AbstractXmlIterator.java:39)
    7. psidev.psi.mi.jami.xml.io.iterator.AbstractXmlIterator.<init>(AbstractXmlIterator.java:31)
    8. psidev.psi.mi.jami.xml.io.iterator.XmlInteractionEvidenceIterator.<init>(XmlInteractionEvidenceIterator.java:17)
    9. psidev.psi.mi.jami.xml.model.extension.datasource.XmlEvidenceStreamSource.createXmlIterator(XmlEvidenceStreamSource.java:84)
    10. psidev.psi.mi.jami.xml.model.extension.datasource.AbstractPsiXmlStream.getInteractionsIterator(AbstractPsiXmlStream.java:108)
    11. psidev.psi.mi.jami.xml.model.extension.datasource.DefaultPsiXmlStreamSource.getInteractionsIterator(DefaultPsiXmlStreamSource.java:44)
    12. psidev.psi.mi.jami.examples.interactionviewer.ReadWriteJsonWithJami.main(ReadWriteJsonWithJami.java:79)
    12 frames