java.lang.RuntimeException: Gene tree Tree.t:10814 has no lineages for species taxon specie1

Google Groups | Andrés Parada | 3 months ago
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  1. 0

    StarBEAST2 "no lineages for species taxon X" error

    Google Groups | 3 months ago | Andrés Parada
    java.lang.RuntimeException: Gene tree Tree.t:10814 has no lineages for species taxon specie1
  2. 0

    STARBEAST SpeciesTreeUCLN Java or Likelihood error

    Google Groups | 2 months ago | Andrés Parada
    java.lang.NullPointerException
  3. 0

    Potential bug in BEAUTI?

    Google Groups | 1 year ago | Jim McGuire
    java.lang.Exception: Cannot find species with name volans in species tree at > beast.evolution.speciation.GeneTreeForSpeciesTreeDistribution.initAndValidate(Unknown > Source)
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    Root Cause Analysis

    1. java.lang.RuntimeException

      Gene tree Tree.t:10814 has no lineages for species taxon specie1

      at starbeast2.StarBeastInitializer.fullInit()
    2. starbeast2
      StarBeastInitializer.initStateNodes
      1. starbeast2.StarBeastInitializer.fullInit(StarBeastInitializer.java:232)
      2. starbeast2.StarBeastInitializer.initStateNodes(StarBeastInitializer.java:101)
      2 frames
    3. beast.core
      MCMC.run
      1. beast.core.MCMC.run(Unknown Source)
      1 frame
    4. beast.app
      BeastMCMC.run
      1. beast.app.BeastMCMC.run(Unknown Source)
      1 frame
    5. beast.app.beastapp
      BeastLauncher.main
      1. beast.app.beastapp.BeastMain.<init>(Unknown Source)
      2. beast.app.beastapp.BeastMain.main(Unknown Source)
      3. beast.app.beastapp.BeastLauncher.main(Unknown Source)
      3 frames