java.lang.RuntimeException: Non-positive weighted edge:>>136_Blood_comp125844_c2_seq5-->136_Blood_comp125844_c2_seq5<< -1.1

GitHub | katsikora | 4 months ago
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  1. 0

    GitHub comment 2#272483322

    GitHub | 4 months ago | katsikora
    java.lang.RuntimeException: Non-positive weighted edge:>>136_Blood_comp125844_c2_seq5-->136_Blood_comp125844_c2_seq5<< -1.1
  2. 0

    "Case index out of bounds" - Merging control flow

    GitHub | 3 years ago | warmfusion
    java.lang.RuntimeException: Case index out of bounds : 16
  3. 0

    unknown crash

    GitHub | 11 months ago | gconcepcion
    java.lang.reflect.InvocationTargetException
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  5. 0

    groupBy broken: Expected a collection type, found NominalType

    GitHub | 3 years ago | szeiger
    scala.slick.SlickException: Expected a collection type, found NominalType($@2063246672)({s2: Int/INTEGER, s3: String/VARCHAR})
  6. 0

    When connecting to Google Apps the following error is returned. {panel} Failed to connect to Google Apps Atlassian Cloud was unable to connect your Google Apps domain. {panel} With this stack trace. {code} java.lang.NullPointerException at models.google.DirectoryApi$$anonfun$4.apply(GoogleUsers.scala:160) at models.google.DirectoryApi$$anonfun$4.apply(GoogleUsers.scala:154) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) at scala.collection.Iterator$class.foreach(Iterator.scala:727) at scala.collection.AbstractIterator.foreach(Iterator.scala:1157) at scala.collection.IterableLike$class.foreach(IterableLike.scala:72) at scala.collection.AbstractIterable.foreach(Iterable.scala:54) at scala.collection.TraversableLike$class.map(TraversableLike.scala:244) at scala.collection.AbstractTraversable.map(Traversable.scala:105) at models.google.DirectoryApi$$anonfun$fetchPage$1$1$$anonfun$apply$7$$anonfun$apply$8.apply(GoogleUsers.scala:178) at models.google.DirectoryApi$$anonfun$fetchPage$1$1$$anonfun$apply$7$$anonfun$apply$8.apply(GoogleUsers.scala:171) at scala.util.Try$.apply(Try.scala:161) at models.google.DirectoryApi$$anonfun$fetchPage$1$1$$anonfun$apply$7.apply(GoogleUsers.scala:171) at models.google.DirectoryApi$$anonfun$fetchPage$1$1$$anonfun$apply$7.apply(GoogleUsers.scala:171) at scalaz.EitherTMonad$$anonfun$point$1.apply(EitherT.scala:281) at scalaz.EitherTMonad$$anonfun$point$1.apply(EitherT.scala:281) at scalaz.FreeInstances$$anon$5.point(Free.scala:276) at scalaz.FreeInstances$$anon$5.point(Free.scala:275) at scalaz.EitherTMonad$class.point(EitherT.scala:281) at scalaz.EitherTInstances0$$anon$3.point(EitherT.scala:235) at scalaz.EitherTInstances0$$anon$3.point(EitherT.scala:235) at scalaz.KleisliApplicative$$anonfun$point$1.apply(Kleisli.scala:206) at scalaz.KleisliFunctions$$anon$17.run(Kleisli.scala:160) at scalaz.Kleisli$$anonfun$map$1.apply(Kleisli.scala:38) at scalaz.KleisliFunctions$$anon$17.run(Kleisli.scala:160) at scalaz.Kleisli$$anonfun$flatMap$1$$anonfun$apply$2.apply(Kleisli.scala:47) at scalaz.EitherT$$anonfun$flatMap$1$$anonfun$apply$4.apply(EitherT.scala:93) at scalaz.$bslash$div$class.fold(Either.scala:40) at scalaz.$bslash$div$minus.fold(Either.scala:283) at scalaz.EitherT$$anonfun$flatMap$1.apply(EitherT.scala:93) at scalaz.EitherT$$anonfun$flatMap$1.apply(EitherT.scala:93) at scalaz.Free$$anonfun$resume$2.apply(Free.scala:83) at scalaz.Free$$anonfun$resume$2.apply(Free.scala:83) at scalaz.Free.resume(Free.scala:81) at scalaz.Free.scalaz$Free$$runM2$1(Free.scala:128) at scalaz.Free$$anonfun$scalaz$Free$$runM2$1$1.apply(Free.scala:129) at scalaz.Free$$anonfun$scalaz$Free$$runM2$1$1.apply(Free.scala:129) at scala.concurrent.Future$$anonfun$flatMap$1.apply(Future.scala:251) at scala.concurrent.Future$$anonfun$flatMap$1.apply(Future.scala:249) at scala.concurrent.impl.CallbackRunnable.run(Promise.scala:32) at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.processBatch$1(BatchingExecutor.scala:67) at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply$mcV$sp(BatchingExecutor.scala:82) at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply(BatchingExecutor.scala:59) at akka.dispatch.BatchingExecutor$Batch$$anonfun$run$1.apply(BatchingExecutor.scala:59) at scala.concurrent.BlockContext$.withBlockContext(BlockContext.scala:72) at akka.dispatch.BatchingExecutor$Batch.run(BatchingExecutor.scala:58) at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:42) at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:386) at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260) at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339) at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979) at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107) {code} This is caused by the Google directory API returning null for {{com.google.api.services.admin.directory.model.User.getName()}}, which the Google Apps code does not handle safely.

    Atlassian JIRA | 2 years ago | Luis Miranda
    java.lang.NullPointerException

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    Root Cause Analysis

    1. java.lang.RuntimeException

      Non-positive weighted edge:>>136_Blood_comp125844_c2_seq5-->136_Blood_comp125844_c2_seq5<< -1.1

      at upenn.junto.algorithm.Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1$$anonfun$apply$1.apply()
    2. upenn.junto.algorithm
      Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1$$anonfun$apply$1.apply
      1. upenn.junto.algorithm.Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1$$anonfun$apply$1.apply(Adsorption.scala:179)
      2. upenn.junto.algorithm.Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1$$anonfun$apply$1.apply(Adsorption.scala:169)
      2 frames
    3. Scala
      ArrayOps$ofRef.foreach
      1. scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
      2. scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
      2 frames
    4. upenn.junto.algorithm
      Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1.apply
      1. upenn.junto.algorithm.Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1.apply(Adsorption.scala:169)
      2. upenn.junto.algorithm.Adsorption$$anonfun$run$1$$anonfun$apply$mcVI$sp$1.apply(Adsorption.scala:162)
      2 frames
    5. Scala
      AbstractIterable.foreach
      1. scala.collection.Iterator$class.foreach(Iterator.scala:727)
      2. scala.collection.AbstractIterator.foreach(Iterator.scala:1157)
      3. scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
      4. scala.collection.AbstractIterable.foreach(Iterable.scala:54)
      4 frames
    6. upenn.junto.algorithm
      Adsorption$$anonfun$run$1.apply$mcVI$sp
      1. upenn.junto.algorithm.Adsorption$$anonfun$run$1.apply$mcVI$sp(Adsorption.scala:162)
      1 frame
    7. Scala
      Range.foreach$mVc$sp
      1. scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:141)
      1 frame
    8. upenn.junto.algorithm
      Adsorption.run
      1. upenn.junto.algorithm.Adsorption.run(Adsorption.scala:155)
      1 frame
    9. upenn.junto.app
      JuntoConfigRunner.main
      1. upenn.junto.app.JuntoRunner$.apply(Junto.scala:72)
      2. upenn.junto.app.JuntoConfigRunner$.apply(Junto.scala:121)
      3. upenn.junto.app.JuntoConfigRunner$.main(Junto.scala:132)
      4. upenn.junto.app.JuntoConfigRunner.main(Junto.scala)
      4 frames