java.lang.RuntimeException: Unknown DB found. ID: SFLDF00063

GitHub | julie-sullivan | 1 month ago
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  1. 0

    InterPro: new DB error

    GitHub | 1 month ago | julie-sullivan
    java.lang.RuntimeException: Unknown DB found. ID: SFLDF00063
  2. 0

    GitHub comment 1449#258495079

    GitHub | 4 months ago | julie-sullivan
    java.lang.NullPointerException: Path: "Protein.primaryIdentifier", pathToIndex: "{}", prefix: "Protein", query: "<query name="" model="genomi c" view="Protein.primaryIdentifier Protein.primaryAccession Protein.organism.name Protein.length" longDescription=""><constraint path="Protein" op="IN" value="InterMine_workshop_ListA"/></query>"
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    Bio tests are failing on travis

    GitHub | 2 years ago | alexkalderimis
    junit.framework.AssertionFailedError: null
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  5. 0

    FlyReg - binding site not associated with a publication

    GitHub | 4 years ago | julie-sullivan
    java.lang.RuntimeException: no pubmed id for: ```xml <item id="6_1" class="TFBindingSite"> <attribute name="length" value="5"/> <attribute name="name" value="srp_Hand:REDFLY:TF001395"/> <attribute name="primaryIdentifier" value="TF001395"/> <reference name="chromosome" ref_id="4_1"/> <reference name="chromosomeLocation" ref_id="7_1"/> <reference name="organism" ref_id="0_1"/> <collection name="dataSets"> <reference ref_id="2_1"/> </collection> </item> ``` > at org.intermine.bio.dataconversion.FlyRegGFF3RecordHandler.process(FlyRegGFF3RecordHandler.java:97)

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    Root Cause Analysis

    1. java.lang.RuntimeException

      Unknown DB found. ID: SFLDF00063

      at org.intermine.bio.dataconversion.Protein2iprConverter.getSource()
    2. org.intermine.bio
      Protein2iprConverter.process
      1. org.intermine.bio.dataconversion.Protein2iprConverter.getSource(Protein2iprConverter.java:204)
      2. org.intermine.bio.dataconversion.Protein2iprConverter.process(Protein2iprConverter.java:137)
      2 frames