java.lang.RuntimeException: Unknown DB found. ID: SFLDF00063

GitHub | julie-sullivan | 3 months ago
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    FlyReg - binding site not associated with a publication

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    java.lang.RuntimeException: no pubmed id for: ```xml <item id="6_1" class="TFBindingSite"> <attribute name="length" value="5"/> <attribute name="name" value="srp_Hand:REDFLY:TF001395"/> <attribute name="primaryIdentifier" value="TF001395"/> <reference name="chromosome" ref_id="4_1"/> <reference name="chromosomeLocation" ref_id="7_1"/> <reference name="organism" ref_id="0_1"/> <collection name="dataSets"> <reference ref_id="2_1"/> </collection> </item> ``` > at org.intermine.bio.dataconversion.FlyRegGFF3RecordHandler.process(FlyRegGFF3RecordHandler.java:97)

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    Root Cause Analysis

    1. java.lang.RuntimeException

      Unknown DB found. ID: SFLDF00063

      at org.intermine.bio.dataconversion.Protein2iprConverter.getSource()
    2. org.intermine.bio
      Protein2iprConverter.process
      1. org.intermine.bio.dataconversion.Protein2iprConverter.getSource(Protein2iprConverter.java:204)
      2. org.intermine.bio.dataconversion.Protein2iprConverter.process(Protein2iprConverter.java:137)
      2 frames