java.lang.NullPointerException

GitHub | nh13 | 3 months ago
tip
Your exception is missing from the Samebug knowledge base.
Here are the best solutions we found on the Internet.
Click on the to mark the helpful solution and get rewards for you help.
  1. 0

    Errors with Picard with the output of miniAlign

    GitHub | 3 months ago | danarte
    java.lang.ArrayIndexOutOfBoundsException: 37
  2. Speed up your debug routine!

    Automated exception search integrated into your IDE

  3. 0

    CollectRNASeqMetrics configuration issues at http://usegalaxy.org

    GitHub | 1 year ago | jennaj
    picard.PicardException: Sequence dictionaries differ in /galaxy-repl/main/files/XX.dat and /galaxy-repl/main/files/XX.dat

    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. java.lang.NullPointerException

      No message provided

      at picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord()
    2. picard.analysis.directed
      RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord
      1. picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord(RnaSeqMetricsCollector.java:171)
      2. picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord(RnaSeqMetricsCollector.java:98)
      2 frames
    3. picard.metrics
      MultiLevelCollector.acceptRecord
      1. picard.metrics.MultiLevelCollector$AllReadsDistributor.acceptRecord(MultiLevelCollector.java:192)
      2. picard.metrics.MultiLevelCollector.acceptRecord(MultiLevelCollector.java:315)
      2 frames
    4. picard.analysis
      SinglePassSamProgram.doWork
      1. picard.analysis.CollectRnaSeqMetrics.acceptRead(CollectRnaSeqMetrics.java:164)
      2. picard.analysis.SinglePassSamProgram.makeItSo(SinglePassSamProgram.java:138)
      3. picard.analysis.SinglePassSamProgram.doWork(SinglePassSamProgram.java:77)
      3 frames
    5. picard.cmdline
      PicardCommandLine.main
      1. picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:205)
      2. picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:94)
      3. picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:104)
      3 frames