java.lang.NullPointerException

GitHub | nh13 | 1 month ago
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  1. 0

    Errors with Picard with the output of miniAlign

    GitHub | 1 month ago | danarte
    java.lang.ArrayIndexOutOfBoundsException: 37
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    Root Cause Analysis

    1. java.lang.NullPointerException

      No message provided

      at picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord()
    2. picard.analysis.directed
      RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord
      1. picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord(RnaSeqMetricsCollector.java:171)
      2. picard.analysis.directed.RnaSeqMetricsCollector$PerUnitRnaSeqMetricsCollector.acceptRecord(RnaSeqMetricsCollector.java:98)
      2 frames
    3. picard.metrics
      MultiLevelCollector.acceptRecord
      1. picard.metrics.MultiLevelCollector$AllReadsDistributor.acceptRecord(MultiLevelCollector.java:192)
      2. picard.metrics.MultiLevelCollector.acceptRecord(MultiLevelCollector.java:315)
      2 frames
    4. picard.analysis
      SinglePassSamProgram.doWork
      1. picard.analysis.CollectRnaSeqMetrics.acceptRead(CollectRnaSeqMetrics.java:164)
      2. picard.analysis.SinglePassSamProgram.makeItSo(SinglePassSamProgram.java:138)
      3. picard.analysis.SinglePassSamProgram.doWork(SinglePassSamProgram.java:77)
      3 frames
    5. picard.cmdline
      PicardCommandLine.main
      1. picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:205)
      2. picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:94)
      3. picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:104)
      3 frames