Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via GitHub by fleharty
, 1 year ago
Unexpected base in allele bases '*ATAT'
java.lang.IllegalArgumentException: Unexpected base in allele bases '*ATAT'	at htsjdk.variant.variantcontext.Allele.(Allele.java:162)	at htsjdk.variant.variantcontext.Allele.create(Allele.java:234)	at htsjdk.variant.variantcontext.Allele.create(Allele.java:355)	at picard.vcf.GenotypeConcordance$Alleles.asList(GenotypeConcordance.java:641)	at picard.vcf.GenotypeConcordance.writeVcfTuple(GenotypeConcordance.java:431)	at picard.vcf.GenotypeConcordance.lambda$doWork$39(GenotypeConcordance.java:333)