java.lang.IllegalArgumentException

Unexpected base in allele bases '*ATAT'


Solutions on the web4836

Solution icon of github
Unexpected base in allele bases '*ATAT'

Solution icon of web
via broadinstitute.org by Unknown author, 1 year ago
Illegal base [K] seen in the allele

Solution icon of github
via GitHub by stsmall
, 1 year ago
Illegal base [ ] seen in the allele

Solution icon of github
Illegal base [ ] seen in the allele

Solution icon of googlegroups
via Google Groups by Sungwook Yoon, 1 year ago
Duplicate allele added to VariantContext: A

Solution icon of googlegroups
via Google Groups by Unknown author, 1 month ago
NucleotideAlignmentConstants: getNucleotideDiploidByte: unknown allele value: 1

Solution icon of web
via broadinstitute.org by Unknown author, 1 year ago
Duplicate allele added to VariantContext: G

Solution icon of github
Duplicate allele added to VariantContext: N

Solution icon of oraclecommunity
Can't load standa rd profile: PYCC.pf at java.awt.color.ICC_Profile$2.run(Unknown (Unknown Source) at atat at java.security.AccessController.doPrivileged(Native Method) at atat at java.awt.color.ICC_Profile.getStandardProfile(Unknown Source

Stack trace

  • java.lang.IllegalArgumentException: Unexpected base in allele bases '*ATAT' at htsjdk.variant.variantcontext.Allele.<init>(Allele.java:162) at htsjdk.variant.variantcontext.Allele.create(Allele.java:234) at htsjdk.variant.variantcontext.Allele.create(Allele.java:355) at picard.vcf.GenotypeConcordance$Alleles.asList(GenotypeConcordance.java:641) at picard.vcf.GenotypeConcordance.writeVcfTuple(GenotypeConcordance.java:431) at picard.vcf.GenotypeConcordance.lambda$doWork$39(GenotypeConcordance.java:333)

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