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via GitHub by fleharty
, 1 year ago
Unexpected base in allele bases '*ATAT'
java.lang.IllegalArgumentException: Unexpected base in allele bases '*ATAT'	at htsjdk.variant.variantcontext.Allele.(	at htsjdk.variant.variantcontext.Allele.create(	at htsjdk.variant.variantcontext.Allele.create(	at picard.vcf.GenotypeConcordance$Alleles.asList(	at picard.vcf.GenotypeConcordance.writeVcfTuple(	at picard.vcf.GenotypeConcordance.lambda$doWork$39(