java.lang.IllegalArgumentException: Unexpected base in allele bases '*ATAT'

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via GitHub by fleharty
, 10 months ago
Unexpected base in allele bases '*ATAT'
java.lang.IllegalArgumentException: Unexpected base in allele bases '*ATAT'
at htsjdk.variant.variantcontext.Allele.(Allele.java:162)
at htsjdk.variant.variantcontext.Allele.create(Allele.java:234)
at picard.vcf.GenotypeConcordance$Alleles.asList(GenotypeConcordance.java:641)
at picard.vcf.GenotypeConcordance.writeVcfTuple(GenotypeConcordance.java:431)
at picard.vcf.GenotypeConcordance.lambda$doWork$39(GenotypeConcordance.java:333)

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