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via GitHub by cmnbroad
, 1 year ago
via GitHub by droazen
, 1 year ago
Line number 109 (not counting comments) expected [20 10012362 . G T 835.77 . AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=3200.000;MLEAC=2;MLEAF=1.00;QD=35.92;RAW_MQ=66527.00;SOR=4.003 GT:AD:DP:GQ:PL 1/1:0,23:23:69:864,69,0] but found [20 10012362
via DataStax JIRA by Joaquin Casares, 1 year ago
expected [java.nio.HeapByteBuffer[pos=0 lim=4 cap=4]] but found [null]
via DataStax JIRA by Joaquin Casares, 1 year ago
expected [java.nio.HeapByteBuffer[pos=0 lim=4 cap=4]] but found [null]
java.lang.AssertionError: line counts expected [2629] but found [507]	at org.testng.Assert.fail(Assert.java:94)	at org.testng.Assert.failNotEquals(Assert.java:496)	at org.testng.Assert.assertEquals(Assert.java:125)	at org.testng.Assert.assertEquals(Assert.java:372)	at org.broadinstitute.hellbender.utils.test.IntegrationTestSpec.assertEqualTextFiles(IntegrationTestSpec.java:211)	at org.broadinstitute.hellbender.utils.test.IntegrationTestSpec.assertEqualTextFiles(IntegrationTestSpec.java:190)	at org.broadinstitute.hellbender.tools.examples.ExampleAssemblyRegionWalkerSparkIntegrationTest.testExampleAssemblyRegionWalker(ExampleAssemblyRegionWalkerSparkIntegrationTest.java:29)	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)	at java.lang.reflect.Method.invoke(Method.java:498)	at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)	at org.testng.internal.Invoker.invokeMethod(Invoker.java:639)	at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:821)	at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1131)	at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)	at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)	at org.testng.TestRunner.privateRun(TestRunner.java:773)	at org.testng.TestRunner.run(TestRunner.java:623)	at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)	at org.testng.SuiteRunner.run(SuiteRunner.java:259)	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)	at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)	at org.testng.TestNG.run(TestNG.java:1018)	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:129)	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:88)	at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:61)	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)	at java.lang.reflect.Method.invoke(Method.java:498)	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)	at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)	at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)	at com.sun.proxy.$Proxy2.stop(Unknown Source)	at org.gradle.api.internal.tasks.testing.worker.TestWorker.stop(TestWorker.java:120)	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)	at java.lang.reflect.Method.invoke(Method.java:498)	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)	at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:377)	at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:54)	at org.gradle.internal.concurrent.StoppableExecutorImpl$1.run(StoppableExecutorImpl.java:40)	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)	at java.lang.Thread.run(Thread.java:745)