java.nio.file.NoSuchFileException: /tmp/7849235605615896249.zip1398073512390398444/foo/bar8.wdl

GitHub | delocalizer | 2 months ago
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    "random" java.nio.file.NoSuchFileException in logs referring to zipped import files

    GitHub | 2 months ago | delocalizer
    java.nio.file.NoSuchFileException: /tmp/7849235605615896249.zip1398073512390398444/foo/bar8.wdl
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    GitHub | 2 months ago | delocalizer
    java.nio.file.NoSuchFileException: /tmp/640585481854205084.zip4511378926145376874/bar/foo.wdl
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Root Cause Analysis

  1. java.nio.file.NoSuchFileException

    /tmp/7849235605615896249.zip1398073512390398444/foo/bar8.wdl

    at sun.nio.fs.UnixException.translateToIOException()
  2. Java RT
    Files.readAllLines
    1. sun.nio.fs.UnixException.translateToIOException(UnixException.java:86)
    2. sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
    3. sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
    4. sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:214)
    5. java.nio.file.Files.newByteChannel(Files.java:361)
    6. java.nio.file.Files.newByteChannel(Files.java:407)
    7. java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:384)
    8. java.nio.file.Files.newInputStream(Files.java:152)
    9. java.nio.file.Files.newBufferedReader(Files.java:2784)
    10. java.nio.file.Files.readAllLines(Files.java:3202)
    11. java.nio.file.Files.readAllLines(Files.java:3242)
    11 frames
  3. cromwell.engine.workflow
    MaterializeWorkflowDescriptorActor$$anonfun$14.apply
    1. cromwell.engine.workflow.lifecycle.MaterializeWorkflowDescriptorActor$$anonfun$14.apply(MaterializeWorkflowDescriptorActor.scala:350)
    2. cromwell.engine.workflow.lifecycle.MaterializeWorkflowDescriptorActor$$anonfun$14.apply(MaterializeWorkflowDescriptorActor.scala:349)
    2 frames
  4. Scala
    Stream.map
    1. scala.collection.immutable.Stream$$anonfun$map$1.apply(Stream.scala:418)
    2. scala.collection.immutable.Stream$$anonfun$map$1.apply(Stream.scala:418)
    3. scala.collection.immutable.Stream$Cons.tail(Stream.scala:1233)
    4. scala.collection.immutable.Stream$Cons.tail(Stream.scala:1223)
    5. scala.collection.immutable.Stream$$anonfun$map$1.apply(Stream.scala:418)
    6. scala.collection.immutable.Stream$$anonfun$map$1.apply(Stream.scala:418)
    7. scala.collection.immutable.Stream$Cons.tail(Stream.scala:1233)
    8. scala.collection.immutable.Stream$Cons.tail(Stream.scala:1223)
    9. scala.collection.immutable.Stream.foreach(Stream.scala:595)
    10. scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
    11. scala.collection.immutable.Stream.map(Stream.scala:420)
    11 frames
  5. slick.driver
    JdbcActionComponent$SimpleJdbcDriverAction.run
    1. slick.driver.JdbcActionComponent$InsertActionComposerImpl$MultiInsertAction.run(JdbcActionComponent.scala:522)
    2. slick.driver.JdbcActionComponent$SimpleJdbcDriverAction.run(JdbcActionComponent.scala:32)
    3. slick.driver.JdbcActionComponent$SimpleJdbcDriverAction.run(JdbcActionComponent.scala:29)
    3 frames
  6. slick.dbio
    SynchronousDatabaseAction$FusedAndThenAction$$anonfun$run$4.apply
    1. slick.dbio.SynchronousDatabaseAction$FusedAndThenAction$$anonfun$run$4.apply(DBIOAction.scala:508)
    2. slick.dbio.SynchronousDatabaseAction$FusedAndThenAction$$anonfun$run$4.apply(DBIOAction.scala:508)
    2 frames
  7. Scala
    AbstractIterable.foreach
    1. scala.collection.Iterator$class.foreach(Iterator.scala:893)
    2. scala.collection.AbstractIterator.foreach(Iterator.scala:1336)
    3. scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
    4. scala.collection.AbstractIterable.foreach(Iterable.scala:54)
    4 frames
  8. slick.dbio
    SynchronousDatabaseAction$$anon$11.run
    1. slick.dbio.SynchronousDatabaseAction$FusedAndThenAction.run(DBIOAction.scala:508)
    2. slick.dbio.SynchronousDatabaseAction$$anon$11.run(DBIOAction.scala:545)
    2 frames
  9. slick.backend
    DatabaseComponent$DatabaseDef$$anon$2.run
    1. slick.backend.DatabaseComponent$DatabaseDef$$anon$2.liftedTree1$1(DatabaseComponent.scala:237)
    2. slick.backend.DatabaseComponent$DatabaseDef$$anon$2.run(DatabaseComponent.scala:237)
    2 frames
  10. Java RT
    Thread.run
    1. java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    2. java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    3. java.lang.Thread.run(Thread.java:745)
    3 frames