java.lang.RuntimeException: Call aggregate_mafs_workflow.aggregate_mafs:NA:1: return code was 1

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via GitHub by dheiman
, 10 months ago
Call aggregate_mafs_workflow.aggregate_mafs:NA:1: return code was 1
via GitHub by dheiman
, 9 months ago
Call aggregate_mafs_workflow.aggregate_mafs:NA:1: return code was 1
via GitHub by kcibul
, 10 months ago
Call BamToUnmappedBams.SortSam:0:1: return code was 1
java.lang.RuntimeException: Call aggregate_mafs_workflow.aggregate_mafs:NA:1: return code was 1
at cromwell.backend.standard.StandardAsyncExecutionActor$class.handleExecutionResult(StandardAsyncExecutionActor.scala:432)
at cromwell.backend.impl.sfs.config.BackgroundConfigAsyncJobExecutionActor.handleExecutionResult(ConfigAsyncJobExecutionActor.scala:113)
at cromwell.backend.standard.StandardAsyncExecutionActor$class.handlePollSuccess(StandardAsyncExecutionActor.scala:370)
at cromwell.backend.impl.sfs.config.BackgroundConfigAsyncJobExecutionActor.handlePollSuccess(ConfigAsyncJobExecutionActor.scala:113)
at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$poll$2.apply(StandardAsyncExecutionActor.scala:333)
at cromwell.backend.standard.StandardAsyncExecutionActor$$anonfun$poll$2.apply(StandardAsyncExecutionActor.scala:332)
at scala.util.Success$$anonfun$map$1.apply(Try.scala:237)
at scala.util.Try$.apply(Try.scala:192)
at scala.util.Success.map(Try.scala:237)
at scala.concurrent.Future$$anonfun$map$1.apply(Future.scala:237)
at scala.concurrent.Future$$anonfun$map$1.apply(Future.scala:237)
at akka.dispatch.BatchingExecutor$AbstractBatch.processBatch(BatchingExecutor.scala:55)
at akka.dispatch.BatchingExecutor$BlockableBatch$$anonfun$run$1.apply$mcV$sp(BatchingExecutor.scala:91)
at akka.dispatch.BatchingExecutor$BlockableBatch$$anonfun$run$1.apply(BatchingExecutor.scala:91)
at akka.dispatch.BatchingExecutor$BlockableBatch.run(BatchingExecutor.scala:90)
at akka.dispatch.TaskInvocation.run(AbstractDispatcher.scala:39)
at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)

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