Searched on Google with the first line of a JAVA stack trace?

We can recommend more relevant solutions and speed up debugging when you paste your entire stack trace with the exception message. Try a sample exception.

Recommended solutions based on your search

Solutions on the web

via GitHub by mmokrejs
, 1 year ago
htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 3793131: unparsable vcf record with allele 0
via GitHub by jrobinso
, 1 year ago
htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 3793131: unparsable vcf record with allele 0
via GitHub by mmokrejs
, 1 year ago
htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 3793131: unparsable vcf record with allele 0
htsjdk.tribble.TribbleException: The provided VCF file is malformed at approximately line number 3793131: unparsable vcf record with allele 0	at htsjdk.variant.vcf.AbstractVCFCodec.generateException(AbstractVCFCodec.java:784)	at htsjdk.variant.vcf.AbstractVCFCodec.checkAllele(AbstractVCFCodec.java:569)	at htsjdk.variant.vcf.AbstractVCFCodec.parseSingleAltAllele(AbstractVCFCodec.java:609)	at htsjdk.variant.vcf.AbstractVCFCodec.parseAlleles(AbstractVCFCodec.java:539)	at htsjdk.variant.vcf.AbstractVCFCodec.parseVCFLine(AbstractVCFCodec.java:336)	at htsjdk.variant.vcf.AbstractVCFCodec.decodeLine(AbstractVCFCodec.java:279)	at htsjdk.variant.vcf.AbstractVCFCodec.decode(AbstractVCFCodec.java:257)	at htsjdk.variant.vcf.AbstractVCFCodec.decode(AbstractVCFCodec.java:60)	at htsjdk.tribble.AsciiFeatureCodec.decode(AsciiFeatureCodec.java:79)	at htsjdk.tribble.AsciiFeatureCodec.decode(AsciiFeatureCodec.java:41)	at htsjdk.tribble.AbstractFeatureCodec.decodeLoc(AbstractFeatureCodec.java:43)	at org.broad.igv.feature.tribble.VCFWrapperCodec.decodeLoc(VCFWrapperCodec.java:58)	at org.broad.igv.feature.tribble.VCFWrapperCodec.decodeLoc(VCFWrapperCodec.java:43)	at htsjdk.tribble.index.IndexFactory$FeatureIterator.readNextFeature(IndexFactory.java:502)	at htsjdk.tribble.index.IndexFactory$FeatureIterator.next(IndexFactory.java:464)	at htsjdk.tribble.index.IndexFactory.createIndex(IndexFactory.java:338)	at htsjdk.tribble.index.IndexFactory.createLinearIndex(IndexFactory.java:223)	at org.broad.igv.tools.IgvTools.createTribbleIndex(IgvTools.java:1062)	at org.broad.igv.tools.IgvTools.doIndex(IgvTools.java:981)