org.renjin.eval.EvalException: Exception initializing compiled GNU R library XVector

GitHub | psolaimani | 3 months ago
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    Supports compiling casts between pointers of different types (BytePtr -> CharPtr)

    GitHub | 3 months ago | psolaimani
    org.renjin.eval.EvalException: Exception initializing compiled GNU R library XVector
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    Rsolnp in Java using Renjin

    Stack Overflow | 4 months ago | Sheldon
    org.renjin.eval.EvalException: Could not load package rsolnp; tried org.renjin.bioconductor:rsolnp, org.renjin.cran:rsolnp

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    Root Cause Analysis

    1. java.lang.VerifyError

      Bad type on operand stack Exception Details: Location: org/renjin/bioconductor/XVector/io_utils__.new_filexp(Lorg/renjin/sexp/SEXP;Lorg/renjin/gcc/runtime/BytePtr;Lorg/renjin/gcc/runtime/BytePtr;I)Lorg/renjin/sexp/SEXP; @148: invokestatic Reason: Type 'org/renjin/gcc/runtime/BytePtr' (current frame, stack[0]) is not assignable to 'org/renjin/gcc/runtime/CharPtr' Current Frame: bci: @148 flags: { } locals: { 'org/renjin/sexp/SEXP', 'org/renjin/gcc/runtime/BytePtr', 'org/renjin/gcc/runtime/BytePtr', integer, '[B', integer, '[B', integer, top, 'org/renjin/bioconductor/XVector/record$zfile', top, top, top, top, 'org/renjin/sexp/SEXP', top, top, top, top, top, top, '[B', integer, 'org/renjin/sexp/SEXP', top, top, 'org/renjin/gcc/runtime/BytePtr' } stack: { 'org/renjin/gcc/runtime/BytePtr' } Bytecode: 0000000: 2bb4 0011 3a04 2bb4 0015 3605 2cb4 0011 0000010: 3a06 2cb4 0015 3607 bb00 3059 b700 7b3a 0000020: 092a b800 7f99 0011 a700 032a b800 8304 0000030: a000 06a7 0017 bb00 0d59 1285 b600 5303 0000040: b700 1803 bd00 04b8 008b 2a03 b800 593a 0000050: 0eb2 008e 3a17 190e 1917 a500 06a7 0017 0000060: bb00 0d59 1290 b600 5303 b700 1803 bd00 0000070: 04b8 008b 190e b800 933a 1a19 1ab4 0011 0000080: 3a15 191a b400 1536 16bb 000d 5919 1515 0000090: 16b7 0018 b800 993a 1b19 1bb4 009e c000 00000a0: 263a 0a19 1bb4 009f 360b 190e b800 5d3a 00000b0: 1c19 1cb4 0011 3a13 191c b400 1536 1419 00000c0: 09bb 000d 5919 1315 14b7 0018 bb00 0d59 00000d0: 190a 150b b700 18bb 000d 5919 0415 05b7 00000e0: 0018 bb00 0d59 1906 1507 b700 181d b800 00000f0: a3b6 00a6 bb00 3059 b700 7b3a 0819 08c6 0000100: 0006 a700 1c19 09b8 0034 bb00 0d59 12a8 0000110: b600 5303 b700 1803 bd00 04b8 008b 1908 0000120: 1909 b600 a6b2 003c 3a12 b200 3c3a 1119 0000130: 0819 1119 12b8 00ac 3a0d 190d b800 af57 0000140: bb00 0d59 190a 150b b700 18b8 00b3 3a0c 0000150: 190c b800 af57 bb00 0d59 12b5 b600 5303 0000160: b700 18b8 00b8 3a10 190d 1910 190c b800 0000170: bc57 05b8 00c0 190d b0 Stackmap Table: full_frame(@43,{Object[#113],Object[#13],Object[#13],Integer,Object[#38],Integer,Object[#38],Integer,Top,Object[#48]},{}) same_frame(@54) same_frame(@74) full_frame(@96,{Object[#113],Object[#13],Object[#13],Integer,Object[#38],Integer,Object[#38],Integer,Top,Object[#48],Top,Top,Top,Top,Object[#113],Top,Top,Top,Top,Top,Top,Top,Top,Object[#113]},{}) same_frame(@116) full_frame(@261,{Object[#113],Object[#13],Object[#13],Integer,Object[#38],Integer,Object[#38],Integer,Object[#48],Object[#48],Object[#38],Integer,Top,Top,Object[#113],Top,Top,Top,Top,Object[#38],Integer,Object[#38],Integer,Object[#113],Top,Top,Object[#13],Object[#155],Object[#13]},{}) same_frame(@286)

      at java.lang.invoke.MethodHandleNatives.resolve()
    2. Java RT
      MethodHandleNatives.linkMethodHandleConstant
      1. java.lang.invoke.MethodHandleNatives.resolve(Native Method)
      2. java.lang.invoke.MemberName$Factory.resolve(MemberName.java:847)
      3. java.lang.invoke.MemberName$Factory.resolveOrFail(MemberName.java:872)
      4. java.lang.invoke.MethodHandles$Lookup.resolveOrFail(MethodHandles.java:1133)
      5. java.lang.invoke.MethodHandles$Lookup.linkMethodHandleConstant(MethodHandles.java:1470)
      6. java.lang.invoke.MethodHandleNatives.linkMethodHandleConstant(MethodHandleNatives.java:382)
      6 frames
    3. org.renjin.bioconductor
      XVector.R_init_XVector
      1. org.renjin.bioconductor.XVector.R_init_XVector__.<clinit>(R_init_XVector.c)
      2. org.renjin.bioconductor.XVector.XVector.R_init_XVector(Unknown Source)
      2 frames
    4. Java RT
      Method.invoke
      1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
      3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      4. java.lang.reflect.Method.invoke(Method.java:606)
      4 frames
    5. org.renjin.primitives
      InternalFunction.apply
      1. org.renjin.primitives.packaging.Namespace.importDynamicLibrary(Namespace.java:267)
      2. org.renjin.primitives.packaging.Namespace.initImports(Namespace.java:234)
      3. org.renjin.primitives.packaging.NamespaceRegistry.tryLoad(NamespaceRegistry.java:214)
      4. org.renjin.primitives.packaging.NamespaceRegistry.tryGetNamespace(NamespaceRegistry.java:191)
      5. org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:153)
      6. org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:115)
      7. org.renjin.primitives.packaging.Namespace.initImports(Namespace.java:183)
      8. org.renjin.primitives.packaging.NamespaceRegistry.tryLoad(NamespaceRegistry.java:214)
      9. org.renjin.primitives.packaging.NamespaceRegistry.tryGetNamespace(NamespaceRegistry.java:191)
      10. org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:153)
      11. org.renjin.primitives.packaging.NamespaceRegistry.getNamespace(NamespaceRegistry.java:115)
      12. org.renjin.primitives.packaging.Packages.library(Packages.java:41)
      13. org.renjin.primitives.R$primitive$library.doApply(R$primitive$library.java:73)
      14. org.renjin.primitives.R$primitive$library.apply(R$primitive$library.java:34)
      15. org.renjin.primitives.special.InternalFunction.apply(InternalFunction.java:45)
      15 frames
    6. org.renjin.eval
      Context.evaluate
      1. org.renjin.eval.Context.evaluateCall(Context.java:302)
      2. org.renjin.eval.Context.evaluate(Context.java:222)
      2 frames
    7. org.renjin.primitives
      BeginFunction.apply
      1. org.renjin.primitives.special.BeginFunction.apply(BeginFunction.java:38)
      1 frame
    8. org.renjin.eval
      Context.evaluate
      1. org.renjin.eval.Context.evaluateCall(Context.java:302)
      2. org.renjin.eval.Context.evaluate(Context.java:222)
      3. org.renjin.eval.Context.evaluate(Context.java:163)
      3 frames
    9. org.renjin.sexp
      Closure.doApply
      1. org.renjin.sexp.Closure.doApply(Closure.java:84)
      1 frame
    10. org.renjin.eval
      ClosureDispatcher.applyClosure
      1. org.renjin.eval.ClosureDispatcher.apply(ClosureDispatcher.java:73)
      2. org.renjin.eval.ClosureDispatcher.applyClosure(ClosureDispatcher.java:58)
      2 frames
    11. org.renjin.sexp
      Closure.apply
      1. org.renjin.sexp.Closure.apply(Closure.java:79)
      1 frame
    12. org.renjin.eval
      Context.evaluate
      1. org.renjin.eval.Context.evaluateCall(Context.java:302)
      2. org.renjin.eval.Context.evaluate(Context.java:222)
      3. org.renjin.eval.Context.evaluate(Context.java:163)
      3 frames
    13. org.renjin.packaging
      PackageBuilder.build
      1. org.renjin.packaging.NamespaceBuilder2.loadDepends(NamespaceBuilder2.java:83)
      2. org.renjin.packaging.NamespaceBuilder2.compile(NamespaceBuilder2.java:66)
      3. org.renjin.packaging.PackageBuilder.compileNamespace(PackageBuilder.java:136)
      4. org.renjin.packaging.PackageBuilder.build(PackageBuilder.java:52)
      4 frames
    14. org.renjin.maven
      GnurBuildMojo.execute
      1. org.renjin.maven.GnurBuildMojo.execute(GnurBuildMojo.java:69)
      1 frame
    15. Maven Plugin
      DefaultBuildPluginManager.executeMojo
      1. org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
      1 frame
    16. Maven Core
      DefaultMaven.execute
      1. org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
      2. org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
      3. org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
      4. org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
      5. org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
      6. org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
      7. org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
      8. org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
      9. org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
      9 frames
    17. M3 Interceptor
      MavenCli.main
      1. org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
      2. org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
      3. org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
      3 frames
    18. Java RT
      Method.invoke
      1. sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
      2. sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
      3. sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
      4. java.lang.reflect.Method.invoke(Method.java:606)
      4 frames
    19. Plexus
      Launcher.main
      1. org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
      2. org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
      3. org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
      4. org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
      4 frames