java.lang.IllegalArgumentException

Comparison method violates its general contract!


Solutions on the web1658

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via Eclipse Bugzilla by bugs, 1 year ago
Comparison method violates its general contract!

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Comparison method violates its general contract!

Solution icon of bugzilla
Comparison method violates its general contract!

Solution icon of bugzilla
Comparison method violates its general contract!

Solution icon of github
via GitHub by pures
, 1 year ago
Comparison method violates its general contract!

Solution icon of github
Comparison method violates its general contract!

Solution icon of github
Comparison method violates its general contract!

Solution icon of github
via GitHub by chefarov
, 3 months ago
Comparison method violates its general contract!

Solution icon of github
via GitHub by venusdrogon
, 2 weeks ago
Comparison method violates its general contract!

Solution icon of github
via GitHub by ChristianGruen
, 1 year ago
Comparison method violates its general contract!

Stack trace

  • java.lang.IllegalArgumentException: Comparison method violates its general contract! at java.util.TimSort.mergeLo(TimSort.java:747) at java.util.TimSort.mergeAt(TimSort.java:483) at java.util.TimSort.mergeForceCollapse(TimSort.java:426) at java.util.TimSort.sort(TimSort.java:223) at java.util.TimSort.sort(TimSort.java:173) at java.util.Arrays.sort(Arrays.java:659) at java.util.Collections.sort(Collections.java:217) at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:480) at org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:34) at org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:243) at org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:231) at org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.executeSingleThreaded(NanoScheduler.java:287) at org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.execute(NanoScheduler.java:252) at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:120) at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:67) at org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:23) at org.broadinstitute.sting.gatk.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:74) at org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:281) at org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:113) at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:236) at org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146) at org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:93)

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