java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!

broadinstitute.org | 7 days ago
tip
Your exception is missing from the Samebug knowledge base.
Here are the best solutions we found on the Internet.
Click on the to mark the helpful solution and get rewards for you help.
  1. 0

    Bug report: java.lang.IllegalArgumentException: Comparison method violates its general contract! - GATK-Forum

    broadinstitute.org | 1 year ago
    java.lang.RuntimeException: java.lang.IllegalArgumentException: Comparison method violates its general contract!
  2. 0

    Bug report: java.lang.IllegalArgumentException: Comparison method violates its general contract! — GATK-Forum

    broadinstitute.org | 7 days ago
    java.lang.IllegalArgumentException: Comparison method violates its general contract!
  3. 0

    Comparison method violates its general contract! — GATK-Forum

    broadinstitute.org | 6 months ago
    java.lang.IllegalArgumentException: Comparison method violates its general contract!
  4. Speed up your debug routine!

    Automated exception search integrated into your IDE

  5. 0

    Comparison method violates its general contract! - GATK-Forum

    broadinstitute.org | 1 year ago
    java.lang.IllegalArgumentException: Comparison method violates its general contract!
  6. 0

    Bug report: java.lang.IllegalArgumentException: Comparison method violates its general contract! — GATK-Forum

    broadinstitute.org | 2 months ago
    java.lang.IllegalArgumentException: Comparison method violates its general contract!

    16 unregistered visitors
    Not finding the right solution?
    Take a tour to get the most out of Samebug.

    Tired of useless tips?

    Automated exception search integrated into your IDE

    Root Cause Analysis

    1. java.lang.IllegalArgumentException

      Comparison method violates its general contract!

      at java.util.TimSort.mergeLo()
    2. Java RT
      Collections.sort
      1. java.util.TimSort.mergeLo(TimSort.java:747)
      2. java.util.TimSort.mergeAt(TimSort.java:483)
      3. java.util.TimSort.mergeForceCollapse(TimSort.java:426)
      4. java.util.TimSort.sort(TimSort.java:223)
      5. java.util.TimSort.sort(TimSort.java:173)
      6. java.util.Arrays.sort(Arrays.java:659)
      7. java.util.Collections.sort(Collections.java:217)
      7 frames
    3. org.broadinstitute.cga
      MuTect.map
      1. org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:480)
      2. org.broadinstitute.cga.tools.gatk.walkers.cancer.mutect.MuTect.map(MuTect.java:34)
      2 frames
    4. org.broadinstitute.sting
      CommandLineGATK.main
      1. org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:243)
      2. org.broadinstitute.sting.gatk.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:231)
      3. org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.executeSingleThreaded(NanoScheduler.java:287)
      4. org.broadinstitute.sting.utils.nanoScheduler.NanoScheduler.execute(NanoScheduler.java:252)
      5. org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:120)
      6. org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:67)
      7. org.broadinstitute.sting.gatk.traversals.TraverseLociNano.traverse(TraverseLociNano.java:23)
      8. org.broadinstitute.sting.gatk.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:74)
      9. org.broadinstitute.sting.gatk.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:281)
      10. org.broadinstitute.sting.gatk.CommandLineExecutable.execute(CommandLineExecutable.java:113)
      11. org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:236)
      12. org.broadinstitute.sting.commandline.CommandLineProgram.start(CommandLineProgram.java:146)
      13. org.broadinstitute.sting.gatk.CommandLineGATK.main(CommandLineGATK.java:93)
      13 frames