java.lang.IllegalStateException

The original PLs do not have enough values; accessing index 10011 but size is 10000


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The original PLs do not have enough values; accessing index 10011 but size is 10000

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The original PLs do not have enough values; accessing index 10011 but size is 10000

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The original PLs do not have enough values; accessing index 10011 but size is 10000

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via broadinstitute.org by Unknown author, 1 year ago
The original PLs do not have enough values; accessing index 10011 but size is 10000

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The decoder input buffer is not big enough (nal=91280, capacity=65536).

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via Google Groups by Unknown author, 3 weeks ago
com.microsoft.sqlserver.jdbc. SQLServerException: Cannot find the object "database_firewall_rules" because it does not exist or you do not have permissions.

Solution icon of github
Tried to close span but it is not the current span: [Trace: 772e168c82d1ad59, Span: 1c2c1e8d198e1c4c, Parent: fe1bb22205811063, exportable:true]. You may have forgotten to close or detach null

Solution icon of web
, replaces=-9223372036854775808] size=10000 maxSize=10000 Please check that your keys are immutable, and that you have used synchronization properly. If so, then please report this to commons-dev@jakarta.apache.org as a bug.

Solution icon of googlegroups
via Google Groups by jtoolsdev, 1 year ago
information but not in a ListView. Running the original app (for 1.5 and above) does not throw this error. Here is the rest of the trace if it suggests anything:

Solution icon of oraclecommunity
via Oracle Community by 4996, 1 month ago
com.avega.bpp.domain.Page@2910[objectId=1364,name=Page2 DO NOT USE,title=Page2 DO NOT USE] cannot be saved while it is not in the Default Book

Stack trace

  • java.lang.IllegalStateException: The original PLs do not have enough values; accessing index 10011 but size is 10000 at org.broadinstitute.gatk.utils.variant.GATKVariantContextUtils.generatePLs(GATKVariantContextUtils.java:1637) at org.broadinstitute.gatk.utils.variant.GATKVariantContextUtils.mergeRefConfidenceGenotypes(GATKVariantContextUtils.java:1553) at org.broadinstitute.gatk.utils.variant.GATKVariantContextUtils.referenceConfidenceMerge(GATKVariantContextUtils.java:1124) at org.broadinstitute.gatk.tools.walkers.variantutils.GenotypeGVCFs.map(GenotypeGVCFs.java:191) at org.broadinstitute.gatk.tools.walkers.variantutils.GenotypeGVCFs.map(GenotypeGVCFs.java:112) at org.broadinstitute.gatk.engine.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:267) at org.broadinstitute.gatk.engine.traversals.TraverseLociNano$TraverseLociMap.apply(TraverseLociNano.java:255) at org.broadinstitute.gatk.utils.nanoScheduler.NanoScheduler.executeSingleThreaded(NanoScheduler.java:274) at org.broadinstitute.gatk.utils.nanoScheduler.NanoScheduler.execute(NanoScheduler.java:245) at org.broadinstitute.gatk.engine.traversals.TraverseLociNano.traverse(TraverseLociNano.java:144) at org.broadinstitute.gatk.engine.traversals.TraverseLociNano.traverse(TraverseLociNano.java:92) at org.broadinstitute.gatk.engine.traversals.TraverseLociNano.traverse(TraverseLociNano.java:48) at org.broadinstitute.gatk.engine.executive.LinearMicroScheduler.execute(LinearMicroScheduler.java:99) at org.broadinstitute.gatk.engine.GenomeAnalysisEngine.execute(GenomeAnalysisEngine.java:314) at org.broadinstitute.gatk.engine.CommandLineExecutable.execute(CommandLineExecutable.java:121) at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:248) at org.broadinstitute.gatk.utils.commandline.CommandLineProgram.start(CommandLineProgram.java:155) at org.broadinstitute.gatk.engine.CommandLineGATK.main(CommandLineGATK.java:107)

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