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via Google Groups by lingo, 1 year ago
Negative branch length: -5.427047224652571E-4
java.lang.RuntimeException: Negative branch length: -5.427047224652571E-4 at java.util.concurrent.FutureTask.report(Unknown Source) at java.util.concurrent.FutureTask.get(Unknown Source) at dr.inference.model.CompoundLikelihood.getLogLikelihood(Unknown Source) at dr.inference.model.CompoundLikelihood.evaluateLikelihoods(Unknown Source) at dr.inference.model.CompoundLikelihood.getLogLikelihood(Unknown Source) at dr.inference.model.PathLikelihood.getLogLikelihood(Unknown Source) at dr.inference.markovchain.MarkovChain.evaluate(Unknown Source) at dr.inference.markovchain.MarkovChain.runChain(Unknown Source) at dr.inference.mcmc.MarginalLikelihoodEstimator.integrate(Unknown Source) at dr.inference.mcmc.MarginalLikelihoodEstimator.run(Unknown Source) at java.lang.Thread.run(Unknown Source)Caused by: java.lang.RuntimeException: Negative branch length: -5.427047224652571E-4 at dr.evomodel.treelikelihood.TreeLikelihood.traverse(Unknown Source) at dr.evomodel.treelikelihood.TreeLikelihood.traverse(Unknown Source) at dr.evomodel.treelikelihood.TreeLikelihood.traverse(Unknown Source) at dr.evomodel.treelikelihood.TreeLikelihood.traverse(Unknown Source) at dr.evomodel.treelikelihood.TreeLikelihood.calculateLogLikelihood(Unknown Source) at dr.evomodel.treelikelihood.AbstractTreeLikelihood.getLogLikelihood(Unknown Source) at dr.inference.model.CompoundLikelihood$LikelihoodCaller.call(Unknown Source) at dr.inference.model.CompoundLikelihood$LikelihoodCaller.call(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) ... 1 more