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via GitHub by ijulca
, 5 months ago
Command line failed with exit code: 139 Command: bin/sfld/sfld_postprocess -s data/sfld/2/sfld_sites.annot -a /home/tmp/titan_20170530_094020591_evo//jobSFLD/000000000002_000000000091.raw.align.out -O /home/tmp/titan_20170530_094020591_evo//jobSFLD
via GitHub by rafiko1
, 2 weeks ago
Command line failed with exit code: 25 Command: bin/prosite/ps_scan.pl -d data/prosite/2018_02/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2018_02/prosite_models /home/rafiko1/my_interproscan/interproscan-5.29-68.0/temp/LAPTOP
via GitHub by wangxf133
, 2 months ago
Command line failed with exit code: 25 Command: bin/prosite/ps_scan.pl -d data/prosite/2017_09/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2017_09/prosite_models /mnt/e/Interproscan/interproscan-5.28-67.0/temp/DESKTOP
via GitHub by diecasfranco
, 5 months ago
Command line failed with exit code: 127 Command: /home/dfranco/interproscan/interproscan-5.25-64.0/bin/blast/ncbi-blast-2.6.0+/rpsblast -query /home/dfranco/analise_metagenoma/anvio_results/HR4/temp/seal_20171004_104055397_hqhj//jobCDD
via GitHub by wangzhennan14
, 2 weeks ago
Command line failed with exit code: 17 Command: bin/prosite/ps_scan.pl -d data/prosite/2017_09/prosite.dat -w bin/prosite/pfsearch -s -m -o gff -y data/prosite/2017_09/prosite_models /vol2/agis/ruanjue_group/wangzhennan/assembly/wuhan-reannot/ips
java.lang.IllegalStateException: Command line failed with exit code: 139Command: bin/sfld/sfld_postprocess -s data/sfld/2/sfld_sites.annot -a /home/tmp/titan_20170530_094020591_evo//jobSFLD/000000000002_000000000091.raw.align.out -O /home/tmp/titan_20170530_094020591_evo//jobSFLD/000000000002_000000000091.raw.out -d /home/tmp/titan_20170530_094020591_evo//jobSFLD/000000000002_000000000091.raw.domtblout.out -o /home/tmp/titan_20170530_094020591_evo//jobSFLD/000000000002_000000000091_one.raw.out Error output from binary: at uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep.execute(RunBinaryStep.java:190) at uk.ac.ebi.interpro.scan.jms.activemq.StepExecutionTransactionImpl.executeInTransaction(StepExecutionTransactionImpl.java:86) at sun.reflect.GeneratedMethodAccessor93.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207) at com.sun.proxy.$Proxy106.executeInTransaction(Unknown Source) at uk.ac.ebi.interpro.scan.jms.worker.LocalJobQueueListener.onMessage(LocalJobQueueListener.java:189) at org.springframework.jms.listener.AbstractMessageListenerContainer.doInvokeListener(AbstractMessageListenerContainer.java:746) at org.springframework.jms.listener.AbstractMessageListenerContainer.invokeListener(AbstractMessageListenerContainer.java:684) at org.springframework.jms.listener.AbstractMessageListenerContainer.doExecuteListener(AbstractMessageListenerContainer.java:651) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.doReceiveAndExecute(AbstractPollingMessageListenerContainer.java:315) at org.springframework.jms.listener.AbstractPollingMessageListenerContainer.receiveAndExecute(AbstractPollingMessageListenerContainer.java:253) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.invokeListener(DefaultMessageListenerContainer.java:1150) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.executeOngoingLoop(DefaultMessageListenerContainer.java:1142) at org.springframework.jms.listener.DefaultMessageListenerContainer$AsyncMessageListenerInvoker.run(DefaultMessageListenerContainer.java:1039) at java.lang.Thread.run(Thread.java:748)